Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   CAC01_RS21750 Genome accession   NZ_CP021118
Coordinates   5113394..5114065 (+) Length   223 a.a.
NCBI ID   WP_007827091.1    Uniprot ID   A0ABD5DZS5
Organism   Streptomyces sp. CLI2509 strain CLI2905     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5108394..5119065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAC01_RS21715 (CAC01_21635) - 5108454..5108648 (+) 195 WP_009065301.1 hypothetical protein -
  CAC01_RS21720 (CAC01_21640) - 5108792..5109097 (+) 306 WP_095683101.1 hypothetical protein -
  CAC01_RS21740 (CAC01_21660) tig 5110925..5112313 (+) 1389 WP_009065295.1 trigger factor -
  CAC01_RS21745 (CAC01_21665) clpP 5112671..5113276 (+) 606 WP_010271700.1 ATP-dependent Clp protease proteolytic subunit Regulator
  CAC01_RS21750 (CAC01_21670) clpP 5113394..5114065 (+) 672 WP_007827091.1 ATP-dependent Clp protease proteolytic subunit Regulator
  CAC01_RS21755 (CAC01_21675) clpX 5114260..5115546 (+) 1287 WP_007827092.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  CAC01_RS21760 (CAC01_21680) - 5115630..5116658 (-) 1029 WP_095683102.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24506.02 Da        Isoelectric Point: 4.7870

>NTDB_id=190451 CAC01_RS21750 WP_007827091.1 5113394..5114065(+) (clpP) [Streptomyces sp. CLI2509 strain CLI2905]
MVNTHMNNFPGSGLYTGPQVDNRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDR
DISIYINSPGGSMTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGAPGKRMALPNARVLIHQPSSQTGREQLSDLE
IAAKEIMRMRTQLEDMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLVDQITTPRKVVGSAA

Nucleotide


Download         Length: 672 bp        

>NTDB_id=190451 CAC01_RS21750 WP_007827091.1 5113394..5114065(+) (clpP) [Streptomyces sp. CLI2509 strain CLI2905]
ATGGTGAACACACACATGAACAACTTCCCCGGCAGCGGCCTCTACACGGGCCCCCAGGTGGACAACCGCTACATCGTCCC
GCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCC
TCGGCGTGCAGATCGACGACGCCTCGGCGAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCCGACCGG
GACATCTCCATCTACATCAACAGCCCCGGCGGCTCGATGACCGCGCTCACCGCGATCTACGACACGATGCAGTTCGTGAA
GCCGGACATCCAGACCGTGTGCATGGGCCAGGCCGCCTCGGCCGCCGCCGTGCTGCTCGCCGCCGGCGCCCCCGGCAAGC
GGATGGCACTGCCCAACGCCCGCGTCCTGATCCACCAGCCCTCCAGCCAGACCGGCCGCGAGCAGCTCTCCGACCTGGAG
ATCGCGGCCAAGGAGATCATGCGTATGCGTACGCAGCTGGAGGACATGCTCGCCAAGCACTCGACGACGCCGATCGAGAA
GATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGATGCCCTCGCCTACGGGCTTGTCGACCAGATCACCA
CCCCGCGTAAGGTGGTGGGTTCCGCCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(35-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD5DZS5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

85.202

0.435
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

84.305

0.417
  clpP Streptococcus thermophilus LMG 18311

44.103

87.444

0.386
  clpP Streptococcus thermophilus LMD-9

44.103

87.444

0.386
  clpP Streptococcus mutans UA159

45.503

84.753

0.386
  clpP Streptococcus pyogenes MGAS315

44.974

84.753

0.381
  clpP Streptococcus pneumoniae D39

44.974

84.753

0.381
  clpP Streptococcus pneumoniae Rx1

44.974

84.753

0.381
  clpP Streptococcus pneumoniae R6

44.974

84.753

0.381
  clpP Streptococcus pneumoniae TIGR4

44.974

84.753

0.381
  clpP Streptococcus pyogenes JRS4

44.974

84.753

0.381
  clpP Lactococcus lactis subsp. cremoris KW2

43.684

85.202

0.372
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.158

85.202

0.368

Multiple sequence alignment