Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | A6L41_RS05210 | Genome accession | NZ_CP016655 |
| Coordinates | 1021141..1022079 (-) | Length | 312 a.a. |
| NCBI ID | WP_002248274.1 | Uniprot ID | - |
| Organism | Neisseria meningitidis strain M22772 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 973175..1030756 | 1021141..1022079 | within | 0 |
Gene organization within MGE regions
Location: 973175..1030756
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6L41_RS04915 (A6L41_04915) | - | 973175..975400 (+) | 2226 | WP_002220751.1 | NADP-dependent isocitrate dehydrogenase | - |
| A6L41_RS13480 | - | 976568..976702 (+) | 135 | Protein_905 | IS110 family transposase | - |
| A6L41_RS04925 (A6L41_04925) | - | 976766..977773 (+) | 1008 | Protein_906 | IS5 family transposase | - |
| A6L41_RS04930 (A6L41_04930) | - | 977911..978879 (+) | 969 | Protein_907 | IS5 family transposase | - |
| A6L41_RS14520 (A6L41_04935) | - | 979283..979414 (+) | 132 | WP_002217434.1 | hypothetical protein | - |
| A6L41_RS04940 (A6L41_04940) | - | 979411..979779 (+) | 369 | WP_002220735.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| A6L41_RS14060 | - | 979795..979965 (+) | 171 | WP_164728559.1 | hypothetical protein | - |
| A6L41_RS04945 (A6L41_04945) | - | 980217..980708 (+) | 492 | WP_002217437.1 | DUF4760 domain-containing protein | - |
| A6L41_RS04950 (A6L41_04950) | - | 981067..981303 (+) | 237 | WP_002217439.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| A6L41_RS04955 (A6L41_04955) | - | 981305..981652 (+) | 348 | WP_002217440.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| A6L41_RS04960 (A6L41_04960) | - | 981705..982214 (-) | 510 | WP_002220734.1 | hypothetical protein | - |
| A6L41_RS04965 (A6L41_04965) | - | 982226..982699 (-) | 474 | WP_002220733.1 | D-Ala-D-Ala carboxypeptidase family metallohydrolase | - |
| A6L41_RS04970 (A6L41_04970) | - | 982838..983113 (-) | 276 | WP_002217443.1 | hypothetical protein | - |
| A6L41_RS04975 (A6L41_04975) | - | 983110..983535 (-) | 426 | WP_002220721.1 | hypothetical protein | - |
| A6L41_RS04980 (A6L41_04980) | - | 983599..983970 (-) | 372 | WP_002220720.1 | hypothetical protein | - |
| A6L41_RS14595 | - | 984038..984244 (-) | 207 | WP_002217448.1 | hypothetical protein | - |
| A6L41_RS04985 (A6L41_04985) | - | 984261..984707 (-) | 447 | WP_002220718.1 | hypothetical protein | - |
| A6L41_RS04990 (A6L41_04990) | gpJ | 984778..989043 (-) | 4266 | WP_002220717.1 | TipJ family phage tail tip protein | - |
| A6L41_RS04995 (A6L41_04995) | - | 989179..989901 (-) | 723 | WP_002220716.1 | tail assembly protein | - |
| A6L41_RS05000 (A6L41_05000) | - | 989898..990653 (-) | 756 | WP_002244525.1 | C40 family peptidase | - |
| A6L41_RS05005 (A6L41_05005) | - | 990650..991372 (-) | 723 | WP_002217456.1 | phage minor tail protein L | - |
| A6L41_RS05010 (A6L41_05010) | - | 991432..991701 (-) | 270 | WP_002217457.1 | phage tail protein | - |
| A6L41_RS05015 (A6L41_05015) | - | 991723..994941 (-) | 3219 | WP_002224445.1 | phage tail length tape measure family protein | - |
| A6L41_RS05020 (A6L41_05020) | - | 994934..995206 (-) | 273 | WP_002220710.1 | DUF1799 domain-containing protein | - |
| A6L41_RS05025 (A6L41_05025) | - | 995254..995565 (-) | 312 | WP_002220709.1 | phage tail assembly chaperone | - |
| A6L41_RS05030 (A6L41_05030) | - | 995629..996270 (-) | 642 | WP_002220708.1 | phage tail protein | - |
| A6L41_RS05035 (A6L41_05035) | - | 996302..996721 (-) | 420 | WP_002244524.1 | hypothetical protein | - |
| A6L41_RS05040 (A6L41_05040) | - | 996702..997004 (-) | 303 | WP_002244523.1 | head-tail joining protein | - |
| A6L41_RS05045 (A6L41_05045) | - | 996997..997224 (-) | 228 | WP_002220705.1 | hypothetical protein | - |
| A6L41_RS05050 (A6L41_05050) | - | 997282..999174 (-) | 1893 | WP_002220704.1 | phage major capsid protein | - |
| A6L41_RS05055 (A6L41_05055) | - | 999155..1000717 (-) | 1563 | WP_002220703.1 | phage portal protein | - |
| A6L41_RS05060 (A6L41_05060) | - | 1000726..1000980 (-) | 255 | WP_002220702.1 | hypothetical protein | - |
| A6L41_RS05065 (A6L41_05065) | - | 1000967..1001353 (-) | 387 | WP_002220701.1 | DUF3310 domain-containing protein | - |
| A6L41_RS05070 (A6L41_05070) | - | 1001356..1001565 (-) | 210 | WP_002220700.1 | hypothetical protein | - |
| A6L41_RS05075 (A6L41_05075) | - | 1001582..1004428 (-) | 2847 | WP_002220699.1 | primase-helicase family protein | - |
| A6L41_RS05080 (A6L41_05080) | - | 1004543..1004890 (-) | 348 | WP_002220698.1 | hypothetical protein | - |
| A6L41_RS05085 (A6L41_05085) | - | 1005290..1006006 (+) | 717 | WP_002220696.1 | LexA family transcriptional regulator | - |
| A6L41_RS05090 (A6L41_05090) | - | 1006109..1006534 (+) | 426 | WP_002220695.1 | hypothetical protein | - |
| A6L41_RS05095 (A6L41_05095) | - | 1006765..1006965 (+) | 201 | WP_002219431.1 | hypothetical protein | - |
| A6L41_RS05100 (A6L41_05100) | - | 1007033..1007392 (+) | 360 | WP_002220694.1 | hypothetical protein | - |
| A6L41_RS05105 (A6L41_05105) | - | 1007417..1008271 (+) | 855 | WP_002220693.1 | YfdQ family protein | - |
| A6L41_RS05110 (A6L41_05110) | - | 1008343..1008558 (+) | 216 | WP_002220692.1 | hypothetical protein | - |
| A6L41_RS05115 (A6L41_05115) | - | 1008594..1008854 (+) | 261 | WP_002220690.1 | NGO1622 family putative holin | - |
| A6L41_RS05120 (A6L41_05120) | - | 1008851..1009144 (+) | 294 | WP_002220689.1 | hypothetical protein | - |
| A6L41_RS05125 (A6L41_05125) | - | 1009147..1009338 (+) | 192 | WP_002219435.1 | type ISP restriction/modification enzyme | - |
| A6L41_RS05130 (A6L41_05130) | - | 1009338..1009478 (+) | 141 | WP_002220688.1 | hypothetical protein | - |
| A6L41_RS05135 (A6L41_05135) | - | 1009475..1009684 (+) | 210 | WP_002220687.1 | hypothetical protein | - |
| A6L41_RS05140 (A6L41_05140) | - | 1009742..1010659 (-) | 918 | WP_002220686.1 | KilA-N domain-containing protein | - |
| A6L41_RS05145 (A6L41_05145) | - | 1011527..1012006 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| A6L41_RS05160 (A6L41_05160) | - | 1012442..1012822 (-) | 381 | WP_002220683.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| A6L41_RS05165 (A6L41_05165) | - | 1012977..1014173 (-) | 1197 | WP_002224447.1 | tyrosine-type recombinase/integrase | - |
| A6L41_RS05180 (A6L41_05180) | yaaA | 1014705..1015484 (-) | 780 | WP_002220681.1 | peroxide stress protein YaaA | - |
| A6L41_RS14710 | - | 1015533..1015658 (-) | 126 | Protein_956 | IS5/IS1182 family transposase | - |
| A6L41_RS05185 (A6L41_05185) | dapC | 1015746..1016933 (-) | 1188 | WP_002220680.1 | succinyldiaminopimelate transaminase | - |
| A6L41_RS05190 (A6L41_05190) | dut | 1017009..1017461 (-) | 453 | WP_002220679.1 | dUTP diphosphatase | - |
| A6L41_RS05195 (A6L41_05195) | - | 1017604..1018032 (+) | 429 | Protein_959 | AzlC family ABC transporter permease | - |
| A6L41_RS05200 (A6L41_05200) | pilX | 1020091..1020564 (-) | 474 | WP_002248276.1 | PilX family type IV pilin | Machinery gene |
| A6L41_RS05205 (A6L41_05205) | pilK | 1020569..1021162 (-) | 594 | WP_002248275.1 | pilus assembly PilX family protein | Machinery gene |
| A6L41_RS05210 (A6L41_05210) | pilJ | 1021141..1022079 (-) | 939 | WP_002248274.1 | PilW family protein | Machinery gene |
| A6L41_RS05215 (A6L41_05215) | pilV | 1022076..1022687 (-) | 612 | WP_002248273.1 | type IV pilus modification protein PilV | Machinery gene |
| A6L41_RS05220 (A6L41_05220) | pilH | 1022711..1023388 (-) | 678 | WP_002248272.1 | GspH/FimT family pseudopilin | Machinery gene |
| A6L41_RS05225 (A6L41_05225) | dnaB | 1023543..1024949 (-) | 1407 | WP_002248271.1 | replicative DNA helicase | - |
| A6L41_RS05230 (A6L41_05230) | - | 1025112..1025699 (+) | 588 | WP_002220670.1 | superoxide dismutase | - |
| A6L41_RS05235 (A6L41_05235) | - | 1026271..1026780 (-) | 510 | WP_002213852.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| A6L41_RS05240 (A6L41_05240) | - | 1027112..1027444 (-) | 333 | WP_002226445.1 | hypothetical protein | - |
| A6L41_RS14715 | - | 1027489..1027596 (-) | 108 | Protein_969 | IS5/IS1182 family transposase | - |
| A6L41_RS05245 (A6L41_05245) | cysT | 1027735..1028571 (+) | 837 | WP_002226446.1 | sulfate ABC transporter permease subunit CysT | - |
| A6L41_RS05250 (A6L41_05250) | cysW | 1028826..1029686 (+) | 861 | WP_002220668.1 | sulfate ABC transporter permease subunit CysW | - |
| A6L41_RS05255 (A6L41_05255) | - | 1029683..1030756 (+) | 1074 | WP_002220667.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 312 a.a. Molecular weight: 34374.05 Da Isoelectric Point: 8.9869
>NTDB_id=190450 A6L41_RS05210 WP_002248274.1 1021141..1022079(-) (pilJ) [Neisseria meningitidis strain M22772]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVAQKNRLFSLKRNSTNKLIPITESLNIGYPGFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDDGQWGNPQLLVKKINKMDIRYIYVS
GCPEDDDAGKEETFRYTDKFNSAQDAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNICANRTL
Nucleotide
Download Length: 939 bp
>NTDB_id=190450 A6L41_RS05210 WP_002248274.1 1021141..1022079(-) (pilJ) [Neisseria meningitidis strain M22772]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCTATTCAACAGGATTTGCGGAATGCGGCAACATTAATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAG
GAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCGGATATCCGGGTTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATGATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
GGCTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAGATATACGGATAAATTCAACAGCGCCCAAGATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATATATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
80.063 |
100 |
0.811 |