Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BA953_RS10210 Genome accession   NZ_CP016556
Coordinates   2240019..2241302 (+) Length   427 a.a.
NCBI ID   WP_231115511.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain 58     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2235019..2246302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA953_RS10190 (BA953_10190) pilM 2237376..2238293 (+) 918 WP_065741058.1 pilus assembly protein PilM -
  BA953_RS10195 (BA953_10195) - 2238283..2238840 (+) 558 WP_065741059.1 PilN domain-containing protein -
  BA953_RS10200 (BA953_10200) pilO 2238833..2239423 (+) 591 WP_065741060.1 type 4a pilus biogenesis protein PilO -
  BA953_RS10205 (BA953_10205) - 2239413..2239925 (+) 513 WP_065741061.1 pilus assembly protein PilP -
  BA953_RS10210 (BA953_10210) pilQ 2240019..2241302 (+) 1284 WP_231115511.1 type IV pilus secretin PilQ family protein Machinery gene
  BA953_RS10215 (BA953_10215) aroK 2241479..2241997 (+) 519 WP_006957155.1 shikimate kinase AroK -
  BA953_RS10220 (BA953_10220) aroB 2242029..2243117 (+) 1089 WP_065741062.1 3-dehydroquinate synthase -
  BA953_RS10225 (BA953_10225) - 2243159..2244661 (+) 1503 WP_065741063.1 AAA family ATPase -
  BA953_RS10230 (BA953_10230) - 2244731..2245558 (+) 828 WP_006957149.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 427 a.a.        Molecular weight: 46182.73 Da        Isoelectric Point: 4.5201

>NTDB_id=189159 BA953_RS10210 WP_231115511.1 2240019..2241302(+) (pilQ) [Vibrio coralliilyticus strain 58]
MMSELEIEGKVSDKLSVNFQDIPVRQVLQQIADYNDFNLVVSDAVSGNLTLRVKEVPWPQLLDIILRIKGLEKRMDGSVL
LVATAAEIAQLRQQKLEQEKVTAELQPLESEIIAVRFAKAADIAALLSDSAATRMLSERGAISIDTRTNSLLIRDVAINI
QAMKAIITALDVPVKQVQIEARIVSLNEGDLQELGVRWGFSSTNGSHSVGGSIENNLANLNLYGDSDSSLDDFLNVNLAA
TSVNASTIAFQVAKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIEQGTEIPYLEAASSGATSVNFKKAVLSL
KVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETIVLGGIYQHSVSDTVDQVPLLGDIPLL
GALFRRTYQQMGKSELLIFVTPTVVAP

Nucleotide


Download         Length: 1284 bp        

>NTDB_id=189159 BA953_RS10210 WP_231115511.1 2240019..2241302(+) (pilQ) [Vibrio coralliilyticus strain 58]
ATGATGTCTGAACTTGAGATAGAGGGAAAGGTGTCAGACAAGCTTTCCGTCAATTTTCAGGATATTCCGGTGCGCCAGGT
ATTGCAGCAGATCGCGGACTACAACGATTTTAATCTGGTTGTGTCAGATGCCGTGTCCGGCAATCTGACCCTGAGAGTGA
AGGAGGTTCCGTGGCCACAGTTACTCGATATCATTCTGCGTATTAAGGGATTAGAGAAGCGCATGGATGGCAGTGTGTTG
CTGGTGGCAACGGCGGCTGAAATTGCTCAGCTCAGACAACAGAAGTTGGAGCAGGAGAAAGTCACGGCTGAGCTTCAACC
GTTAGAGTCTGAGATCATTGCCGTGAGATTTGCCAAAGCGGCAGATATTGCGGCATTACTGAGCGATAGCGCTGCGACGC
GGATGTTGTCTGAACGAGGGGCGATTTCAATCGATACTCGAACCAATAGCCTGTTAATTCGCGATGTTGCTATCAATATT
CAAGCGATGAAGGCGATCATTACGGCATTAGATGTGCCGGTGAAACAAGTACAAATTGAGGCGCGCATAGTCAGCTTGAA
TGAAGGTGATTTACAGGAGTTGGGTGTGCGTTGGGGGTTCAGTTCGACTAACGGCAGTCACAGTGTGGGAGGCTCGATAG
AAAATAACTTAGCCAATCTCAATCTGTATGGGGATTCGGACTCGTCACTGGACGATTTTCTCAACGTCAACTTAGCGGCG
ACGTCCGTGAATGCCTCGACGATTGCTTTTCAGGTCGCCAAGCTGGGCAGTGACACTTTACTGGATTTAGAATTGTCAGC
GTTACAAAGAGAATCGAGAGCGGAAGTCATATCCAGCCCGCGTCTGATTACGACTAACAAGCAACCTGCTTACATTGAGC
AGGGGACTGAAATTCCTTATTTAGAGGCAGCATCAAGCGGTGCAACCAGCGTGAATTTTAAAAAAGCAGTGTTAAGTTTA
AAAGTCACCCCGCAAATCACATCGGATAACCGTTTGATTCTCGATCTGAATGTCACCCAAGATAGGCCGGGTCAAGTGGT
CAAAACCGGCACAGGGGAAGCCGTTGCGATAGACACACAACGTATCGGTACTCAGGTGCTGGTCAATAATGGCGAAACCA
TTGTTCTGGGAGGGATTTATCAGCACAGTGTTTCGGATACGGTCGATCAGGTTCCGTTGTTAGGCGACATTCCTTTGCTA
GGTGCGCTTTTTCGACGAACTTATCAGCAAATGGGTAAGAGCGAGTTGTTGATTTTTGTAACGCCAACAGTGGTTGCGCC
TTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(111-176)

Bacterial type II and III secretion system protein (Secretin)

(267-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

71.096

100

0.714
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

71.395

99.063

0.707
  pilQ Vibrio cholerae strain A1552

71.395

99.063

0.707
  pilQ Legionella pneumophila strain Lp02

46.651

97.892

0.457
  pilQ Legionella pneumophila strain ERS1305867

46.651

97.892

0.457
  comQ Acinetobacter baylyi ADP1

42.664

100

0.443
  pilQ Pseudomonas aeruginosa PAK

43.953

100

0.443
  pilQ Acinetobacter baumannii D1279779

38.731

100

0.415
  pilQ Acinetobacter baumannii strain A118

38.731

100

0.415
  comE Haemophilus influenzae 86-028NP

42.365

95.082

0.403
  comE Haemophilus influenzae Rd KW20

41.007

97.658

0.4

Multiple sequence alignment