Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BSY15_RS03400 Genome accession   NZ_CP016447
Coordinates   772780..773994 (+) Length   404 a.a.
NCBI ID   WP_069103616.1    Uniprot ID   A0A1B3PHB3
Organism   Acidovorax sp. RAC01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 767780..778994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY15_RS03375 (BSY15_687) rpmA 769033..769290 (-) 258 WP_069103613.1 50S ribosomal protein L27 -
  BSY15_RS03380 (BSY15_688) rplU 769307..769618 (-) 312 WP_005794184.1 50S ribosomal protein L21 -
  BSY15_RS03385 (BSY15_689) - 769792..770775 (+) 984 WP_231940697.1 polyprenyl synthetase family protein -
  BSY15_RS03395 (BSY15_691) pilB 771021..772760 (+) 1740 WP_069103615.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BSY15_RS03400 (BSY15_692) pilC 772780..773994 (+) 1215 WP_069103616.1 type II secretion system F family protein Machinery gene
  BSY15_RS03405 (BSY15_693) - 773994..774866 (+) 873 WP_069103617.1 A24 family peptidase -
  BSY15_RS03410 (BSY15_694) coaE 774902..775510 (+) 609 WP_069103618.1 dephospho-CoA kinase -
  BSY15_RS03415 (BSY15_695) zapD 775601..776356 (+) 756 WP_069106358.1 cell division protein ZapD -
  BSY15_RS20515 - 776422..776640 (+) 219 WP_083235534.1 DNA gyrase inhibitor YacG -
  BSY15_RS03420 (BSY15_696) - 776891..777319 (-) 429 WP_156779046.1 NUDIX domain-containing protein -
  BSY15_RS03425 (BSY15_697) - 777363..778235 (-) 873 WP_069103620.1 ATP-binding protein -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44412.25 Da        Isoelectric Point: 9.4161

>NTDB_id=188313 BSY15_RS03400 WP_069103616.1 772780..773994(+) (pilC) [Acidovorax sp. RAC01]
MATAASNIKEFVFEWEGKDRHGKVVRGEIRASGENQVQATLRRQGVFPTKIKKRRMRSGKKIKPKDIALFTRQLATMMKA
GVPLLQSFDIVGRGNTNASVTKLLNDIRQDVETGTSLNAAFRKHPMYFDTLYCNLVEAGEAAGILEALLDRLATYMEKTE
AIKSKIRSALMYPTSVIIVAFVVVAVIMIFVIPAFKEVFTSFGADLPAPTLFVMAVSEVFVKWWWLIFGSIGATVYFFMQ
AWRRNEKMQMFMDRVLLKVPIFGALIDKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNSVYAMATEKIQQEVSTGTS
LTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFKL
GQVV

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=188313 BSY15_RS03400 WP_069103616.1 772780..773994(+) (pilC) [Acidovorax sp. RAC01]
ATGGCGACTGCCGCGTCGAACATCAAGGAATTCGTTTTCGAATGGGAGGGCAAGGATCGCCATGGCAAGGTCGTGAGAGG
CGAGATCCGGGCATCTGGCGAAAATCAGGTTCAAGCAACCTTGCGTCGCCAAGGCGTTTTTCCCACGAAAATAAAGAAAC
GCCGGATGCGCTCCGGCAAGAAAATCAAGCCGAAGGATATTGCACTTTTCACGCGGCAGCTGGCCACCATGATGAAAGCC
GGCGTACCGCTACTTCAATCGTTCGATATCGTGGGACGAGGCAATACGAATGCCAGCGTAACCAAGCTGCTGAACGATAT
CAGACAGGATGTGGAGACCGGGACATCGCTCAATGCTGCATTTCGCAAGCATCCGATGTATTTCGACACCTTGTATTGCA
ATTTGGTAGAGGCAGGCGAAGCTGCAGGTATTCTTGAAGCGCTACTGGACCGTCTTGCAACCTACATGGAGAAAACAGAG
GCCATCAAATCCAAAATCAGATCAGCCTTAATGTACCCCACCTCGGTTATTATTGTAGCCTTCGTGGTGGTCGCAGTGAT
CATGATTTTCGTCATACCCGCATTCAAGGAAGTTTTTACATCCTTCGGAGCAGACCTCCCAGCGCCCACTCTTTTTGTGA
TGGCGGTCAGTGAGGTTTTCGTGAAGTGGTGGTGGCTTATTTTCGGCAGTATCGGCGCAACTGTTTATTTTTTCATGCAG
GCATGGCGCCGAAACGAGAAAATGCAGATGTTCATGGATCGCGTTCTGCTTAAAGTTCCGATTTTTGGAGCCTTGATCGA
CAAGTCTTGTGTTGCCCGCTGGACGCGGACATTGGCAACCATGTTCGCCGCGGGGGTCCCTCTGGTGGAAGCGCTGGATT
CGGTAGGTGGCGCATCGGGGAATTCCGTGTATGCCATGGCGACGGAGAAAATACAACAGGAGGTGTCTACGGGTACGAGT
CTGACCGCTGCCATGGGCAATGCCAACGTATTTCCGTCCATGGTCCTCCAAATGTGCGCAATTGGCGAGGAGTCGGGCTC
GATTGATCACATGTTGGGGAAAGCTGCTGATTTCTACGAAGCAGAGGTCGATGAGATGGTGGCCGGGCTGTCCAGCCTGA
TGGAGCCCATCATCATTGTTTTTCTGGGAACGCTGATCGGGGGCATCGTCGTCTCGATGTACCTTCCGATCTTCAAGCTT
GGCCAAGTCGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3PHB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.96

100

0.54
  pilG Neisseria gonorrhoeae MS11

51.613

99.752

0.515
  pilG Neisseria meningitidis 44/76-A

51.365

99.752

0.512
  pilC Legionella pneumophila strain ERS1305867

49.495

98.02

0.485
  pilC Acinetobacter baylyi ADP1

48.995

98.515

0.483
  pilC Acinetobacter baumannii D1279779

48.363

98.267

0.475
  pilC Vibrio cholerae strain A1552

41.31

98.267

0.406
  pilC Vibrio campbellii strain DS40M4

39.216

100

0.396
  pilC Thermus thermophilus HB27

38.861

100

0.389

Multiple sequence alignment