Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VSVS05_RS13445 Genome accession   NZ_CP016414
Coordinates   2948742..2949881 (-) Length   379 a.a.
NCBI ID   WP_065545885.1    Uniprot ID   A0A1C7FEF4
Organism   Vibrio scophthalmi strain VS-05     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2943742..2954881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSVS05_RS13415 (VSVS05_02746) hemF 2944148..2945068 (-) 921 WP_065545882.1 oxygen-dependent coproporphyrinogen oxidase -
  VSVS05_RS13420 (VSVS05_02747) - 2945130..2945687 (-) 558 WP_009386325.1 L-threonylcarbamoyladenylate synthase -
  VSVS05_RS13425 (VSVS05_02748) purE 2945883..2946368 (+) 486 WP_005597378.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VSVS05_RS13430 (VSVS05_02749) - 2946372..2947514 (+) 1143 WP_065545883.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VSVS05_RS13435 (VSVS05_02750) - 2947569..2948147 (-) 579 WP_065545884.1 type I DNA topoisomerase -
  VSVS05_RS13440 (VSVS05_02751) - 2948269..2948745 (-) 477 WP_005597359.1 DUF494 family protein -
  VSVS05_RS13445 (VSVS05_02752) dprA 2948742..2949881 (-) 1140 WP_065545885.1 DNA-processing protein DprA Machinery gene
  VSVS05_RS13450 (VSVS05_02753) - 2949885..2950820 (-) 936 WP_065545886.1 peptidoglycan-binding protein LysM -
  VSVS05_RS13455 (VSVS05_02754) def 2950991..2951500 (+) 510 WP_005597353.1 peptide deformylase -
  VSVS05_RS13460 (VSVS05_02755) fmt 2951519..2952466 (+) 948 WP_005597351.1 methionyl-tRNA formyltransferase -
  VSVS05_RS13465 (VSVS05_02756) rsmB 2952605..2953885 (+) 1281 WP_009386321.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 41159.69 Da        Isoelectric Point: 8.4805

>NTDB_id=188169 VSVS05_RS13445 WP_065545885.1 2948742..2949881(-) (dprA) [Vibrio scophthalmi strain VS-05]
MIVESNESDLDLIAWLTLYFTPRLGPKGMSKLLSKASATQLVTYDPPQLLALGLTEAQVRSIQQPNQLYLMQCLEWLHAS
TEHHIITLQSESYPPLLKQISAPPAVLFVKGDLKALHQPQIALVGSRHASIDGLNNAKHFAAALVQHGLVVTSGLALGID
GYAHDGALTAKGKTIAVLGCGLEHVYPARHRKLAARVVQNGALVSEFHPRTLPKASNFPRRNRIISGLSLGVLVVEAAEK
SGSLITARYAAEQGREVFAIPGSIQVPQARGCNSLIQQGACLVQSEQDVLNEIDTLLRWSNINKPLMQIEHSLEKEQKEQ
LPFAKLLANVGAEVTPVDILAQRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRGKL

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=188169 VSVS05_RS13445 WP_065545885.1 2948742..2949881(-) (dprA) [Vibrio scophthalmi strain VS-05]
ATGATTGTAGAGAGTAATGAGTCTGATCTCGACCTTATCGCGTGGCTGACGCTTTACTTCACCCCAAGGCTTGGGCCCAA
AGGGATGAGTAAGCTACTTAGCAAGGCATCTGCAACGCAGTTAGTCACTTATGATCCGCCGCAACTTTTGGCGCTCGGCT
TAACTGAAGCGCAAGTGAGGTCAATTCAACAGCCGAATCAGCTTTATTTAATGCAATGTTTAGAGTGGCTGCATGCATCG
ACAGAGCACCATATTATCACGTTGCAGTCGGAGTCTTATCCGCCGCTATTGAAACAGATTTCTGCACCGCCGGCAGTATT
GTTTGTTAAAGGTGATTTGAAAGCATTACATCAGCCACAAATTGCCTTGGTCGGCAGTCGTCATGCCTCGATTGATGGTT
TAAACAACGCCAAACACTTCGCTGCCGCATTGGTTCAGCATGGTTTGGTGGTCACCAGTGGCTTGGCGCTAGGTATTGAT
GGTTATGCACATGATGGGGCTCTAACGGCGAAAGGCAAAACCATCGCAGTACTGGGTTGTGGTCTTGAGCATGTTTATCC
CGCTCGCCATCGAAAACTCGCAGCACGAGTGGTGCAAAATGGCGCTTTGGTATCGGAGTTTCACCCTCGAACGTTGCCGA
AAGCGAGCAACTTTCCGCGCCGTAATCGCATTATTAGTGGCTTGTCGCTGGGTGTCTTGGTTGTGGAAGCGGCGGAAAAA
AGCGGTTCTCTGATCACCGCGCGCTATGCTGCAGAGCAAGGTCGAGAAGTTTTTGCTATTCCTGGCTCTATTCAAGTGCC
ACAAGCGAGAGGTTGTAACAGCCTGATCCAGCAAGGGGCGTGCTTAGTACAAAGTGAACAAGATGTGTTAAATGAAATAG
ATACACTGTTGCGCTGGTCTAATATTAATAAGCCTTTAATGCAAATTGAGCATAGCTTGGAAAAAGAGCAGAAAGAACAA
TTGCCATTTGCCAAGCTGTTAGCTAACGTAGGAGCCGAAGTAACACCTGTTGATATTCTGGCACAAAGGACCAATATCCC
TGTGCAAGAGGTCATGATGCAGCTCTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGTA
AGGGGAGGGGCAAGCTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-284)

DprA winged helix domain (DprA_WH)

(324-370)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C7FEF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

66.577

97.889

0.652
  dprA Vibrio cholerae strain A1552

59.079

97.361

0.575
  dprA Glaesserella parasuis strain SC1401

46.883

97.361

0.456
  dprA Legionella pneumophila strain ERS1305867

46.006

95.778

0.441
  dprA Neisseria meningitidis strain C311

39.031

100

0.404
  dprA Neisseria meningitidis MC58

39.031

100

0.404
  dprA Neisseria gonorrhoeae MS11

37.789

100

0.388
  dprA Neisseria gonorrhoeae strain FA1090

37.532

100

0.385
  dprA Haemophilus influenzae Rd KW20

50.725

72.823

0.369

Multiple sequence alignment