Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | LLJM2_RS02190 | Genome accession | NZ_CP015900 |
| Coordinates | 436623..437012 (+) | Length | 129 a.a. |
| NCBI ID | WP_021165898.1 | Uniprot ID | A0A166Z4Y5 |
| Organism | Lactococcus cremoris strain JM2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 431623..442012
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLJM2_RS02165 (LLJM2_0418) | pepA | 432482..433549 (-) | 1068 | WP_021165896.1 | glutamyl aminopeptidase | - |
| LLJM2_RS02170 (LLJM2_0419) | - | 433652..433936 (+) | 285 | WP_011675459.1 | hypothetical protein | - |
| LLJM2_RS02175 (LLJM2_0420) | - | 433981..434298 (+) | 318 | WP_011675460.1 | thioredoxin family protein | - |
| LLJM2_RS02180 (LLJM2_0421) | ytpR | 434404..435030 (+) | 627 | WP_011675461.1 | YtpR family tRNA-binding protein | - |
| LLJM2_RS02185 (LLJM2_0422) | nox | 435192..436532 (+) | 1341 | WP_021216210.1 | H2O-forming NADH oxidase | - |
| LLJM2_RS02190 (LLJM2_0423) | ssbB | 436623..437012 (+) | 390 | WP_021165898.1 | single-stranded DNA-binding protein | Machinery gene |
| LLJM2_RS02195 (LLJM2_0424) | groES | 437131..437415 (+) | 285 | WP_011675464.1 | co-chaperone GroES | - |
| LLJM2_RS02200 (LLJM2_0425) | groL | 437502..439130 (+) | 1629 | WP_021213999.1 | chaperonin GroEL | - |
| LLJM2_RS02205 (LLJM2_0426) | - | 439182..439994 (-) | 813 | WP_011675466.1 | MBL fold metallo-hydrolase | - |
| LLJM2_RS02210 (LLJM2_0427) | - | 440184..441611 (-) | 1428 | WP_011675468.1 | cell wall metabolism sensor histidine kinase WalK | - |
Sequence
Protein
Download Length: 129 a.a. Molecular weight: 14703.77 Da Isoelectric Point: 6.9865
>NTDB_id=182966 LLJM2_RS02190 WP_021165898.1 436623..437012(+) (ssbB) [Lactococcus cremoris strain JM2]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETFVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF
Nucleotide
Download Length: 390 bp
>NTDB_id=182966 LLJM2_RS02190 WP_021165898.1 436623..437012(+) (ssbB) [Lactococcus cremoris strain JM2]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTCGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
96.899 |
100 |
0.969 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
60 |
100 |
0.605 |
| ssbA | Streptococcus mutans UA159 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
56.154 |
100 |
0.566 |
| ssbB/cilA | Streptococcus mitis SK321 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
55.385 |
100 |
0.558 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
55.385 |
100 |
0.558 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
41.964 |
86.822 |
0.364 |