Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4V06_RS04250 Genome accession   NZ_CP015410
Coordinates   879100..879573 (+) Length   157 a.a.
NCBI ID   WP_065535923.1    Uniprot ID   -
Organism   Enterococcus faecalis strain KB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 874100..884573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V06_RS04215 (A4V06_02135) - 874127..874447 (+) 321 WP_065535917.1 hypothetical protein -
  A4V06_RS04220 (A4V06_02140) - 874518..874739 (+) 222 WP_065535918.1 DUF6290 family protein -
  A4V06_RS04225 (A4V06_02145) - 874732..875004 (+) 273 WP_010711009.1 type II toxin-antitoxin system RelE family toxin -
  A4V06_RS04230 (A4V06_02150) - 875185..875670 (+) 486 WP_065535919.1 DUF3801 domain-containing protein -
  A4V06_RS04235 (A4V06_02155) - 875670..877481 (+) 1812 WP_065535920.1 VirD4-like conjugal transfer protein, CD1115 family -
  A4V06_RS04240 (A4V06_02160) - 877641..878393 (+) 753 WP_065535921.1 Fic family protein -
  A4V06_RS04245 (A4V06_02165) - 878498..879061 (+) 564 WP_065535922.1 hypothetical protein -
  A4V06_RS04250 (A4V06_02170) ssb 879100..879573 (+) 474 WP_065535923.1 single-stranded DNA-binding protein Machinery gene
  A4V06_RS04255 (A4V06_02175) - 879685..879975 (+) 291 WP_065535924.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17729.64 Da        Isoelectric Point: 4.7815

>NTDB_id=179266 A4V06_RS04250 WP_065535923.1 879100..879573(+) (ssb) [Enterococcus faecalis strain KB1]
MINNVTLVGRLTKDPDLRYTVSGTAVATFTLAVNRNFTNQNGDREADFINCVIWRKPSETLSNYARKGTLLGIEGRIQTR
NYENQQGQRVYVTEVIVESFQLLESKEVSEQRRANRATPVTNGQQESYQQQAPLSDPLDPFSKESSPVNISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=179266 A4V06_RS04250 WP_065535923.1 879100..879573(+) (ssb) [Enterococcus faecalis strain KB1]
ATGATTAATAATGTGACATTAGTCGGTCGGTTAACAAAAGATCCTGATTTACGATACACAGTTAGTGGAACAGCGGTTGC
GACTTTTACACTCGCCGTAAATCGTAATTTTACAAATCAAAACGGAGATCGTGAAGCAGACTTTATCAACTGTGTGATTT
GGCGTAAACCTTCAGAGACCTTATCAAACTATGCTCGTAAAGGAACCTTGTTAGGTATCGAAGGACGAATTCAAACCCGT
AATTATGAAAATCAACAAGGGCAACGTGTATATGTAACAGAAGTTATTGTTGAAAGTTTTCAATTGTTAGAATCAAAAGA
AGTGAGCGAACAACGTCGAGCAAATAGGGCAACTCCTGTAACGAATGGACAGCAGGAAAGCTATCAGCAACAAGCTCCAC
TTTCTGATCCGCTTGATCCATTTTCCAAAGAGTCGAGTCCAGTAAATATTTCAGATGATGACCTGCCCTTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.907

100

0.58
  ssbB/cilA Streptococcus pneumoniae TIGR4

48.413

80.255

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.516

0.389
  ssbB/cilA Streptococcus pneumoniae R6

47.619

80.255

0.382
  ssbB/cilA Streptococcus mitis SK321

47.619

80.255

0.382
  ssbB/cilA Streptococcus mitis NCTC 12261

47.619

80.255

0.382
  ssbB/cilA Streptococcus pneumoniae Rx1

47.619

80.255

0.382
  ssbB/cilA Streptococcus pneumoniae D39

47.619

80.255

0.382
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.361

77.707

0.376

Multiple sequence alignment