Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   A6F57_RS05155 Genome accession   NZ_CP015346
Coordinates   1184443..1185651 (+) Length   402 a.a.
NCBI ID   WP_063457693.1    Uniprot ID   -
Organism   Alteromonas stellipolaris strain PQQ-44     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1179443..1190651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6F57_RS05130 (A6F57_05130) ampE 1180172..1181041 (-) 870 WP_057789984.1 beta-lactamase regulator AmpE -
  A6F57_RS05135 (A6F57_05135) ampD 1181101..1181673 (-) 573 WP_063457690.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  A6F57_RS05140 (A6F57_05140) - 1182187..1182717 (+) 531 WP_138118214.1 retropepsin-like aspartic protease family protein -
  A6F57_RS05145 (A6F57_05145) nadC 1182736..1183590 (+) 855 WP_063457691.1 carboxylating nicotinate-nucleotide diphosphorylase -
  A6F57_RS05150 (A6F57_05150) - 1183956..1184375 (+) 420 WP_063457692.1 pilin -
  A6F57_RS05155 (A6F57_05155) pilC 1184443..1185651 (+) 1209 WP_063457693.1 type II secretion system F family protein Machinery gene
  A6F57_RS05160 (A6F57_05160) pilD 1185763..1186683 (+) 921 WP_062087989.1 prepilin peptidase Machinery gene
  A6F57_RS05165 (A6F57_05165) coaE 1186719..1187327 (+) 609 WP_062089102.1 dephospho-CoA kinase -
  A6F57_RS05170 (A6F57_05170) zapD 1187494..1188246 (+) 753 WP_057789972.1 cell division protein ZapD -
  A6F57_RS05175 (A6F57_05175) yacG 1188288..1188515 (+) 228 WP_057789970.1 DNA gyrase inhibitor YacG -
  A6F57_RS05180 (A6F57_05180) - 1188526..1189404 (+) 879 WP_057789967.1 aspartoacylase -
  A6F57_RS05185 (A6F57_05185) mutT 1189512..1189907 (-) 396 WP_063457694.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43741.37 Da        Isoelectric Point: 9.8687

>NTDB_id=178642 A6F57_RS05155 WP_063457693.1 1184443..1185651(+) (pilC) [Alteromonas stellipolaris strain PQQ-44]
MKAAIVYEWQGKDGRGNSRKGEISATNLKEAKMQLRKQGVSVRKVKKQQKSLFSRGGQKITAADISVFSRQIATMLAAGV
TLIQSLDMISQGHAKASMRKLLSEITNEVRSGNPLSNSLRKHPEYFDELYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPVAVVVVALIVTTILLVFVVPQFEEIFSSFGAELPAFTLFVLAISNFVQSYGIFIGIGIGIAGYLFMRAH
KKSQSFRDRVDRAVLKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVFRDAIMFMKKEVAGGMPMH
TSMRATNVFPDMVTQMVAIGEESGSVDAMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=178642 A6F57_RS05155 WP_063457693.1 1184443..1185651(+) (pilC) [Alteromonas stellipolaris strain PQQ-44]
GTGAAGGCTGCAATAGTTTACGAATGGCAAGGAAAAGATGGGCGAGGTAACAGCCGCAAAGGTGAGATTTCGGCTACCAA
CCTTAAAGAAGCCAAAATGCAGCTTCGTAAACAAGGCGTTTCAGTCAGAAAAGTAAAAAAACAACAAAAATCCCTATTTA
GTCGTGGCGGACAAAAAATCACCGCTGCAGACATTTCAGTGTTTTCACGCCAAATTGCTACTATGTTGGCTGCAGGGGTC
ACCCTTATCCAATCTTTAGACATGATATCTCAAGGTCATGCTAAAGCATCAATGCGAAAGTTACTTAGCGAAATCACTAA
CGAAGTCCGCTCAGGTAACCCGCTATCAAACTCGTTGCGTAAACACCCTGAATATTTCGATGAGCTTTATTGCGACTTGG
TTTACACCGGAGAACAGTCCGGTGCTTTAGAGACCATTTACGACCGAATCGCCACCTATAAAGAAAAAGCGGAAGCACTT
AAATCAAAAATTAAAAAAGCGATGTTTTACCCTGTAGCTGTAGTGGTAGTCGCGCTTATTGTAACCACTATATTGTTGGT
ATTTGTGGTACCTCAATTTGAAGAAATTTTTAGTAGTTTCGGGGCTGAGCTTCCTGCCTTCACACTCTTTGTGCTCGCTA
TTTCAAATTTTGTGCAAAGTTACGGGATATTTATAGGCATCGGAATTGGTATAGCTGGCTACTTGTTCATGCGGGCTCAT
AAGAAAAGCCAAAGCTTTCGCGATAGAGTTGATAGAGCGGTTCTTAAAATTCCCGTTATTGGGGAAATACTCAAAAAAGC
CAGTATCGCAAGATTTACTCGCACCCTCGCAACTACTTTTGCTGCCGGTGTACCTTTAATTGGCGCACTTGAATCTGCTG
CTGGCGCGTCGGGCAATGCGGTATTTAGAGACGCTATTATGTTTATGAAAAAAGAAGTTGCGGGCGGCATGCCAATGCAC
ACATCAATGCGCGCCACCAATGTATTTCCCGATATGGTCACGCAAATGGTCGCCATTGGTGAAGAATCTGGCTCTGTCGA
TGCAATGCTCAGTAAAATAGCAACAATATATGAAGCCGAAGTGGATGATATGGTAGATGGTTTAACCAGCCTGCTTGAGC
CTATGATTATGGCTGTGCTAGGCGTAGTGATTGGCGGCCTTATCGTAGCCATGTACCTTCCCATATTTGAAATGGGTAAT
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.69

98.756

0.58
  pilC Acinetobacter baumannii D1279779

52.25

99.502

0.52
  pilC Acinetobacter baylyi ADP1

51.005

99.005

0.505
  pilC Legionella pneumophila strain ERS1305867

51.005

99.005

0.505
  pilC Vibrio cholerae strain A1552

46.465

98.507

0.458
  pilC Vibrio campbellii strain DS40M4

44.862

99.254

0.445
  pilG Neisseria meningitidis 44/76-A

44.386

95.274

0.423
  pilG Neisseria gonorrhoeae MS11

44.125

95.274

0.42
  pilC Thermus thermophilus HB27

36.973

100

0.371

Multiple sequence alignment