Detailed information NTG0178643

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: A6F57_RS05160
• Genome accession: NZ_CP015346
• Coordinates: 1185763..1186683 (+)
• Length: 306 a.a.
• NCBI ID: WP_062087989.1
• Uniprot ID: -
• Organism: Alteromonas stellipolaris strain PQQ-44
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1180763..1191683

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6F57_RS05135 (A6F57_05135)	ampD	1181101..1181673 (-)	573	WP_063457690.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
A6F57_RS05140 (A6F57_05140)	-	1182187..1182717 (+)	531	WP_138118214.1	retropepsin-like aspartic protease family protein	-
A6F57_RS05145 (A6F57_05145)	nadC	1182736..1183590 (+)	855	WP_063457691.1	carboxylating nicotinate-nucleotide diphosphorylase	-
A6F57_RS05150 (A6F57_05150)	-	1183956..1184375 (+)	420	WP_063457692.1	pilin	-
A6F57_RS05155 (A6F57_05155)	pilC	1184443..1185651 (+)	1209	WP_063457693.1	type II secretion system F family protein	Machinery gene
A6F57_RS05160 (A6F57_05160)	pilD	1185763..1186683 (+)	921	WP_062087989.1	prepilin peptidase	Machinery gene
A6F57_RS05165 (A6F57_05165)	coaE	1186719..1187327 (+)	609	WP_062089102.1	dephospho-CoA kinase	-
A6F57_RS05170 (A6F57_05170)	zapD	1187494..1188246 (+)	753	WP_057789972.1	cell division protein ZapD	-
A6F57_RS05175 (A6F57_05175)	yacG	1188288..1188515 (+)	228	WP_057789970.1	DNA gyrase inhibitor YacG	-
A6F57_RS05180 (A6F57_05180)	-	1188526..1189404 (+)	879	WP_057789967.1	aspartoacylase	-
A6F57_RS05185 (A6F57_05185)	mutT	1189512..1189907 (-)	396	WP_063457694.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 34034.22 Da
• Isoelectric Point: 7.1601

>NTDB_id=178643 A6F57_RS05160 WP_062087989.1 1185763..1186683(+) (pilD) [Alteromonas stellipolaris strain PQQ-44]
MEAILLTSQLYPWLFYLFVFVVSLMVGSFLNVVIHRLPIMMENSWKQEYASYFSETDSDATDNKKNAALEASAQTSPETF
NLAKPDSTCPSCGHKIRAWENIPIISYLFLRGKCSNCKTPISIRYPLVELFTALTCTFAAYYFGPTPQAIWAVIFTYILI
ALIFIDLDKMLLPDQLTLPLLWLGLILSTQSIFVGPVDAIIGAAAGYLSLWSVFWLFKIVTGKEGMGYGDFKILAALGAF
TGWQGLPIIILLSSIVGAIAGIAIMLFQNKGKSLAIPFGPYLAVAGWITLFYKDTIITHYIKWALQ

Nucleotide

• Length: 921 bp

>NTDB_id=178643 A6F57_RS05160 WP_062087989.1 1185763..1186683(+) (pilD) [Alteromonas stellipolaris strain PQQ-44]
ATGGAAGCGATATTGCTTACCAGCCAATTATACCCGTGGTTATTCTACCTATTTGTTTTTGTTGTGAGTTTAATGGTAGG
AAGCTTTTTAAATGTGGTTATTCATCGCTTGCCAATTATGATGGAAAACAGTTGGAAGCAGGAATACGCCAGTTACTTTA
GTGAAACTGATAGCGATGCAACAGATAACAAGAAAAACGCGGCTCTAGAAGCTAGTGCACAAACTTCCCCTGAAACGTTT
AATTTAGCCAAGCCAGATAGCACCTGTCCTAGTTGCGGCCACAAAATTCGGGCATGGGAAAACATTCCTATTATTAGCTA
TTTATTCCTTCGCGGGAAATGTTCAAATTGTAAAACCCCTATTTCTATTCGCTATCCGTTAGTAGAGTTATTCACTGCCC
TAACCTGTACATTCGCCGCCTATTATTTTGGCCCAACACCGCAAGCAATATGGGCGGTGATATTTACTTATATTCTTATT
GCCTTAATTTTTATCGATTTAGATAAAATGTTGCTTCCTGATCAACTTACCCTACCCTTACTTTGGCTTGGTTTAATACT
TAGCACACAATCCATTTTTGTAGGCCCTGTTGACGCTATCATTGGTGCCGCCGCCGGATATTTGAGTTTATGGTCTGTAT
TCTGGTTGTTTAAAATAGTCACCGGAAAGGAAGGCATGGGATATGGCGACTTCAAAATATTGGCCGCCCTTGGTGCTTTC
ACAGGCTGGCAGGGCTTGCCTATCATCATTTTACTGTCTTCAATTGTAGGGGCTATTGCCGGTATTGCCATTATGCTATT
CCAAAATAAAGGCAAATCATTGGCTATCCCCTTCGGGCCATATCTTGCCGTCGCAGGTTGGATAACACTCTTTTATAAAG
ACACGATTATTACCCACTATATAAAATGGGCGCTACAGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.559	96.405	0.516
pilD	Vibrio cholerae strain A1552	52.56	95.752	0.503
pilD	Acinetobacter nosocomialis M2	48.084	93.791	0.451
pilD	Acinetobacter baumannii D1279779	48.084	93.791	0.451
pilD	Neisseria gonorrhoeae MS11	45.675	94.444	0.431