Detailed information NTG0178274

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: V471_RS01985
• Genome accession: NZ_CP015283
• Coordinates: 393446..393874 (-)
• Length: 142 a.a.
• NCBI ID: WP_014632541.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain ATCC 25975
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 388446..398874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V471_RS01945 (V471_01950)	-	388578..389024 (-)	447	WP_084871055.1	CAAX protease	-
V471_RS01950 (V471_01955)	-	389098..389754 (-)	657	WP_084871056.1	CPBP family intramembrane glutamic endopeptidase	-
V471_RS01955 (V471_01960)	-	389766..389963 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V471_RS01960 (V471_01965)	-	390214..391407 (-)	1194	WP_003095894.1	acetate kinase	-
V471_RS01965 (V471_01970)	comYH	391464..392420 (-)	957	WP_037601477.1	class I SAM-dependent methyltransferase	Machinery gene
V471_RS01970 (V471_01975)	comGG	392465..392782 (-)	318	WP_037601475.1	competence type IV pilus minor pilin ComGG	-
V471_RS01975 (V471_01980)	comYF	392760..393197 (-)	438	WP_037601472.1	competence type IV pilus minor pilin ComGF	Machinery gene
V471_RS01980 (V471_01985)	comGE	393184..393414 (-)	231	WP_084871057.1	competence type IV pilus minor pilin ComGE	-
V471_RS01985 (V471_01990)	comYD	393446..393874 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
V471_RS01990 (V471_01995)	comYC	393834..394148 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
V471_RS01995 (V471_02000)	comYB	394157..395257 (-)	1101	WP_138261574.1	competence type IV pilus assembly protein ComGB	Machinery gene
V471_RS02000 (V471_02005)	comGA/cglA/cilD	395139..396080 (-)	942	WP_002887018.1	competence type IV pilus ATPase ComGA	Machinery gene
V471_RS02005 (V471_02010)	-	396114..397592 (-)	1479	WP_084871058.1	IS1182 family transposase	-
V471_RS02010 (V471_02015)	-	397722..398084 (-)	363	WP_049529260.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15729.16 Da
• Isoelectric Point: 10.3019

>NTDB_id=178274 V471_RS01985 WP_014632541.1 393446..393874(-) (comYD) [Streptococcus salivarius strain ATCC 25975]
MRNMVAKAAQWPIRAFTLLESLVTLAVVAFLTLSLSGSVTGIFQQVETNLFYLRFEYLYRDSQRLAAAEGSNVELQLSKD
KISNGKSSLVIPKNIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYQLNMGSGKYKKTVS

Nucleotide

• Length: 429 bp

>NTDB_id=178274 V471_RS01985 WP_014632541.1 393446..393874(-) (comYD) [Streptococcus salivarius strain ATCC 25975]
ATGCGAAACATGGTGGCGAAAGCCGCTCAGTGGCCAATTAGAGCCTTTACCTTGTTGGAGAGTCTGGTGACTCTAGCAGT
GGTTGCCTTTCTCACTCTGAGTTTATCAGGCTCAGTCACAGGTATTTTTCAGCAGGTTGAGACTAATCTTTTTTATCTGC
GCTTTGAGTACCTATACCGAGATAGTCAGCGCTTGGCAGCGGCGGAAGGGTCCAATGTTGAATTGCAGTTGTCCAAGGAT
AAAATCAGTAACGGAAAATCCAGTCTGGTGATTCCTAAAAATATACATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
CAAAGGAGGCAACTCTAGCCTCACAAAGATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCAGCTTAACATGGGCA
GCGGTAAATATAAAAAGACGGTCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	54.962	92.254	0.507
comYD	Streptococcus mutans UA159	54.962	92.254	0.507
comYD	Streptococcus gordonii str. Challis substr. CH1	42.857	98.592	0.423
comGD/cglD	Streptococcus pneumoniae Rx1	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae D39	45.669	89.437	0.408
comGD/cglD	Streptococcus pneumoniae R6	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis NCTC 12261	45.669	89.437	0.408
comGD/cglD	Streptococcus mitis SK321	44.882	89.437	0.401
comGD/cglD	Streptococcus pneumoniae TIGR4	44.882	89.437	0.401
comGD	Lactococcus lactis subsp. cremoris KW2	41.667	92.958	0.387