Detailed information NTG0178273

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: V471_RS01975
• Genome accession: NZ_CP015283
• Coordinates: 392760..393197 (-)
• Length: 145 a.a.
• NCBI ID: WP_037601472.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain ATCC 25975
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 387760..398197

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V471_RS01940 (V471_01945)	-	387803..388465 (-)	663	WP_084871054.1	CPBP family intramembrane glutamic endopeptidase	-
V471_RS01945 (V471_01950)	-	388578..389024 (-)	447	WP_084871055.1	CAAX protease	-
V471_RS01950 (V471_01955)	-	389098..389754 (-)	657	WP_084871056.1	CPBP family intramembrane glutamic endopeptidase	-
V471_RS01955 (V471_01960)	-	389766..389963 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V471_RS01960 (V471_01965)	-	390214..391407 (-)	1194	WP_003095894.1	acetate kinase	-
V471_RS01965 (V471_01970)	comYH	391464..392420 (-)	957	WP_037601477.1	class I SAM-dependent methyltransferase	Machinery gene
V471_RS01970 (V471_01975)	comGG	392465..392782 (-)	318	WP_037601475.1	competence type IV pilus minor pilin ComGG	-
V471_RS01975 (V471_01980)	comYF	392760..393197 (-)	438	WP_037601472.1	competence type IV pilus minor pilin ComGF	Machinery gene
V471_RS01980 (V471_01985)	comGE	393184..393414 (-)	231	WP_084871057.1	competence type IV pilus minor pilin ComGE	-
V471_RS01985 (V471_01990)	comYD	393446..393874 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
V471_RS01990 (V471_01995)	comYC	393834..394148 (-)	315	WP_037611125.1	competence type IV pilus major pilin ComGC	Machinery gene
V471_RS01995 (V471_02000)	comYB	394157..395257 (-)	1101	WP_138261574.1	competence type IV pilus assembly protein ComGB	Machinery gene
V471_RS02000 (V471_02005)	comGA/cglA/cilD	395139..396080 (-)	942	WP_002887018.1	competence type IV pilus ATPase ComGA	Machinery gene
V471_RS02005 (V471_02010)	-	396114..397592 (-)	1479	WP_084871058.1	IS1182 family transposase	-
V471_RS02010 (V471_02015)	-	397722..398084 (-)	363	WP_049529260.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16198.60 Da
• Isoelectric Point: 8.4658

>NTDB_id=178273 V471_RS01975 WP_037601472.1 392760..393197(-) (comYF) [Streptococcus salivarius strain ATCC 25975]
MSLNSKVRAFTLLECLVALLVIAGSVQVYQGLTTVLVSNVKQVKQQENQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKSSTISQNNQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=178273 V471_RS01975 WP_037601472.1 392760..393197(-) (comYF) [Streptococcus salivarius strain ATCC 25975]
ATGTCTCTAAATAGTAAGGTTCGCGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTGATTGCTGGTTCAGTCCA
AGTTTATCAAGGTCTGACTACAGTATTGGTGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAACCAAGACTGGCTTCTAT
TTGTCCAACAAATGGAGGCAGAATTAGAAGGTTGTCAGTTGGTAAAGGTAGAGGGGAACAAACTCTATGTCAAGCAAGAT
AATCAAGACCTGGCTTTTGGACTCTCAAGTGCGACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTCAATGTAAAATCTAGTACGATTAGTCAAAATAACCAGATAGTCACCATCCAAGTGACTCTAAAAAACGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (39-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	57.447	97.241	0.559
comYF	Streptococcus mutans UA159	56.738	97.241	0.552
comGF/cglF	Streptococcus pneumoniae Rx1	50.704	97.931	0.497
comGF/cglF	Streptococcus pneumoniae D39	50.704	97.931	0.497
comGF/cglF	Streptococcus pneumoniae R6	50.704	97.931	0.497
comGF/cglF	Streptococcus pneumoniae TIGR4	50.704	97.931	0.497
comGF/cglF	Streptococcus mitis NCTC 12261	47.917	99.31	0.476
comGF/cglF	Streptococcus mitis SK321	47.917	99.31	0.476
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434