Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | A4G17_RS06730 | Genome accession | NZ_CP015029 |
| Coordinates | 1371979..1372431 (-) | Length | 150 a.a. |
| NCBI ID | WP_123956335.1 | Uniprot ID | A0AAE6X5Q6 |
| Organism | Frederiksenia canicola strain HPA 21 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1366979..1377431
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4G17_RS06710 (A4G17_06640) | purF | 1367138..1368655 (+) | 1518 | WP_123956339.1 | amidophosphoribosyltransferase | - |
| A4G17_RS10300 | - | 1368652..1369062 (-) | 411 | WP_236940993.1 | prepilin peptidase | - |
| A4G17_RS06720 (A4G17_06650) | pilC | 1369317..1370504 (-) | 1188 | WP_123956337.1 | type II secretion system F family protein | Machinery gene |
| A4G17_RS06725 (A4G17_06655) | pilB | 1370501..1371895 (-) | 1395 | WP_123956336.1 | GspE/PulE family protein | Machinery gene |
| A4G17_RS06730 (A4G17_06660) | pilA | 1371979..1372431 (-) | 453 | WP_123956335.1 | pilin | Machinery gene |
| A4G17_RS06735 (A4G17_06665) | radA | 1372617..1373996 (+) | 1380 | WP_123956334.1 | DNA repair protein RadA | - |
| A4G17_RS06740 (A4G17_06670) | - | 1374018..1375397 (+) | 1380 | WP_123956333.1 | L-serine ammonia-lyase | - |
| A4G17_RS06745 (A4G17_06675) | argG | 1375477..1376808 (-) | 1332 | WP_123956332.1 | argininosuccinate synthase | - |
Sequence
Protein
Download Length: 150 a.a. Molecular weight: 15842.29 Da Isoelectric Point: 8.8024
>NTDB_id=176288 A4G17_RS06730 WP_123956335.1 1371979..1372431(-) (pilA) [Frederiksenia canicola strain HPA 21]
MAKLHQPLKRAFTLIELMIVIAIIAILATIAIPSYTSYTQKAAMSELLRASSSYKSDVEICIYNLGKTAGCSAGTHGIQA
EKTEVANAKYLKSIAVSDGTITVAGKGTLENISYKLIPTFANNNVTWAGSCTGDSSLFPAGFCSSASPRQ
MAKLHQPLKRAFTLIELMIVIAIIAILATIAIPSYTSYTQKAAMSELLRASSSYKSDVEICIYNLGKTAGCSAGTHGIQA
EKTEVANAKYLKSIAVSDGTITVAGKGTLENISYKLIPTFANNNVTWAGSCTGDSSLFPAGFCSSASPRQ
Nucleotide
Download Length: 453 bp
>NTDB_id=176288 A4G17_RS06730 WP_123956335.1 1371979..1372431(-) (pilA) [Frederiksenia canicola strain HPA 21]
ATGGCTAAACTTCACCAACCGCTCAAACGAGCATTCACATTAATTGAATTGATGATTGTGATTGCAATCATCGCCATTCT
TGCCACCATTGCTATTCCTTCTTACACAAGTTATACGCAAAAAGCGGCAATGTCTGAACTACTTCGAGCCTCATCTTCCT
ATAAATCCGATGTTGAAATCTGTATCTATAATTTAGGAAAAACAGCAGGATGTTCGGCGGGAACTCACGGCATTCAAGCA
GAAAAAACCGAGGTGGCCAATGCCAAATACTTGAAATCTATCGCTGTCAGCGATGGCACGATCACCGTAGCTGGCAAAGG
CACATTGGAAAATATCAGTTATAAACTGATTCCCACTTTCGCTAATAACAATGTGACTTGGGCTGGCAGCTGTACAGGCG
ATAGCAGTCTATTTCCAGCAGGATTCTGCTCAAGTGCTTCGCCAAGACAATAA
ATGGCTAAACTTCACCAACCGCTCAAACGAGCATTCACATTAATTGAATTGATGATTGTGATTGCAATCATCGCCATTCT
TGCCACCATTGCTATTCCTTCTTACACAAGTTATACGCAAAAAGCGGCAATGTCTGAACTACTTCGAGCCTCATCTTCCT
ATAAATCCGATGTTGAAATCTGTATCTATAATTTAGGAAAAACAGCAGGATGTTCGGCGGGAACTCACGGCATTCAAGCA
GAAAAAACCGAGGTGGCCAATGCCAAATACTTGAAATCTATCGCTGTCAGCGATGGCACGATCACCGTAGCTGGCAAAGG
CACATTGGAAAATATCAGTTATAAACTGATTCCCACTTTCGCTAATAACAATGTGACTTGGGCTGGCAGCTGTACAGGCG
ATAGCAGTCTATTTCCAGCAGGATTCTGCTCAAGTGCTTCGCCAAGACAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
69.444 |
96 |
0.667 |
| pilA | Haemophilus influenzae 86-028NP |
57.534 |
97.333 |
0.56 |
| pilA | Haemophilus influenzae Rd KW20 |
55.862 |
96.667 |
0.54 |
| comP | Acinetobacter baylyi ADP1 |
44.056 |
95.333 |
0.42 |
| pilA2 | Legionella pneumophila str. Paris |
41.606 |
91.333 |
0.38 |
| pilA | Vibrio campbellii strain DS40M4 |
36.129 |
100 |
0.373 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
39.855 |
92 |
0.367 |