Detailed information NTG0176286

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: A4G17_RS06720
• Genome accession: NZ_CP015029
• Coordinates: 1369317..1370504 (-)
• Length: 395 a.a.
• NCBI ID: WP_123956337.1
• Uniprot ID: A0AAE6X6J0
• Organism: Frederiksenia canicola strain HPA 21
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1364317..1375504

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A4G17_RS06700 (A4G17_06630)	-	1365273..1366409 (+)	1137	WP_123956341.1	N-acetylneuraminate epimerase	-
A4G17_RS06705 (A4G17_06635)	-	1366626..1367129 (+)	504	WP_123956340.1	CvpA family protein	-
A4G17_RS06710 (A4G17_06640)	purF	1367138..1368655 (+)	1518	WP_123956339.1	amidophosphoribosyltransferase	-
A4G17_RS10300	-	1368652..1369062 (-)	411	WP_236940993.1	prepilin peptidase	-
A4G17_RS06720 (A4G17_06650)	pilC	1369317..1370504 (-)	1188	WP_123956337.1	type II secretion system F family protein	Machinery gene
A4G17_RS06725 (A4G17_06655)	pilB	1370501..1371895 (-)	1395	WP_123956336.1	GspE/PulE family protein	Machinery gene
A4G17_RS06730 (A4G17_06660)	pilA	1371979..1372431 (-)	453	WP_123956335.1	pilin	Machinery gene
A4G17_RS06735 (A4G17_06665)	radA	1372617..1373996 (+)	1380	WP_123956334.1	DNA repair protein RadA	-
A4G17_RS06740 (A4G17_06670)	-	1374018..1375397 (+)	1380	WP_123956333.1	L-serine ammonia-lyase	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 44966.45 Da
• Isoelectric Point: 9.2652

>NTDB_id=176286 A4G17_RS06720 WP_123956337.1 1369317..1370504(-) (pilC) [Frederiksenia canicola strain HPA 21]
MIAEFHWKGVNRFGQKQKGKCLAESRAQLEKQLIHKGYSQLKISRNFVFRSAPKQEEITQTLNQIALLLSAAIPLKNALA
MVLQNCQNIPLYQWINQLIQQLESGFALSSALEKLGKFLPSQEIQLIKMGETSGQLATMFCKIVEARTKSEKLHKKMKKI
LFYPVIVLCISLALSLGLLIFIVPQFAELYDSKGKSLPFITEILFLLSEFLTENIQTISMFSLIMSIFSIWLNKKIPFLT
RLKLAILSHLPIFNQTITHSRIIFFCQHSALMLQAHIRLDRILHSFIQTKSDPVLSSESELVLKLLQQGYRLNDGLNPTI
FGNEVIQMIAIGEQSGNLSEMLNHISELYQQRLDYQIDMLSQLLEPLLMILMGIIIGTILIGLYLPIFDMGSIVE

Nucleotide

• Length: 1188 bp

>NTDB_id=176286 A4G17_RS06720 WP_123956337.1 1369317..1370504(-) (pilC) [Frederiksenia canicola strain HPA 21]
ATGATTGCAGAATTTCACTGGAAAGGTGTAAACCGTTTTGGGCAGAAACAGAAAGGCAAATGCTTAGCGGAAAGTCGAGC
TCAGCTGGAGAAACAGCTGATCCACAAAGGCTATTCTCAACTCAAAATCAGCCGCAATTTTGTATTTAGATCCGCCCCAA
AACAGGAAGAGATTACCCAAACACTAAACCAAATCGCACTGTTGCTCAGTGCGGCGATTCCATTAAAAAATGCGTTAGCA
ATGGTGCTGCAAAATTGCCAAAATATTCCGCTTTATCAATGGATTAATCAACTTATTCAACAGTTAGAAAGTGGTTTTGC
TCTCTCATCTGCGTTAGAAAAATTAGGTAAATTTCTGCCCTCTCAAGAAATTCAGCTAATAAAAATGGGGGAAACAAGCG
GTCAGTTAGCGACTATGTTTTGCAAAATTGTGGAGGCTCGTACTAAATCAGAAAAGTTACATAAAAAAATGAAGAAAATT
CTATTTTACCCTGTGATTGTGTTATGTATTTCGTTGGCACTTTCACTTGGTTTATTGATTTTCATCGTTCCGCAATTTGC
CGAACTGTATGATAGCAAAGGAAAATCATTACCTTTTATTACCGAAATCCTTTTTCTACTCTCTGAGTTTTTAACGGAAA
ACATTCAAACTATTTCAATGTTCAGTTTAATCATGAGTATTTTCAGCATCTGGTTAAATAAAAAGATACCCTTTCTTACT
CGATTAAAATTAGCCATCTTAAGTCACCTTCCCATATTTAATCAAACTATTACCCACTCCCGCATTATTTTCTTCTGCCA
ACATAGTGCATTAATGTTGCAAGCCCATATCCGTTTAGATCGAATTTTACATTCTTTTATTCAGACGAAAAGTGATCCAG
TTTTATCAAGTGAATCAGAGTTGGTTTTAAAATTATTGCAGCAAGGTTATCGCTTAAATGATGGATTAAATCCAACCATT
TTTGGCAATGAAGTGATTCAAATGATTGCAATCGGTGAACAAAGCGGTAATTTATCTGAAATGCTTAACCATATTAGTGA
ACTTTATCAGCAACGGTTAGATTACCAAATTGATATGCTTTCACAATTACTTGAACCGCTATTGATGATATTGATGGGAA
TTATTATTGGCACGATTTTAATTGGACTTTATTTACCCATTTTTGATATGGGGAGTATTGTGGAATGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (265-386)

• Type II secretion system (T2SS), protein F (T2SSF) (62-184)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Glaesserella parasuis strain SC1401	60.759	100	0.608
pilC	Haemophilus influenzae Rd KW20	43.89	100	0.446
pilC	Haemophilus influenzae 86-028NP	43.392	100	0.441