Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AX767_RS05255 Genome accession   NZ_CP014517
Coordinates   1033949..1035169 (+) Length   406 a.a.
NCBI ID   WP_068629271.1    Uniprot ID   A0A126Z9K0
Organism   Variovorax sp. PAMC 28711 strain PAMC28711     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1028949..1040169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AX767_RS05225 (AX767_05225) obgE 1029056..1030132 (-) 1077 WP_068629261.1 GTPase ObgE -
  AX767_RS05230 (AX767_05230) rpmA 1030200..1030460 (-) 261 WP_068629263.1 50S ribosomal protein L27 -
  AX767_RS05235 (AX767_05235) rplU 1030473..1030784 (-) 312 WP_068629265.1 50S ribosomal protein L21 -
  AX767_RS05240 (AX767_05240) - 1030964..1031956 (+) 993 WP_068629267.1 polyprenyl synthetase family protein -
  AX767_RS05250 (AX767_05250) pilB 1032195..1033928 (+) 1734 WP_068629269.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AX767_RS05255 (AX767_05255) pilC 1033949..1035169 (+) 1221 WP_068629271.1 type II secretion system F family protein Machinery gene
  AX767_RS05260 (AX767_05260) - 1035169..1036131 (+) 963 WP_068629273.1 A24 family peptidase -
  AX767_RS05265 (AX767_05265) coaE 1036210..1036755 (+) 546 WP_237288556.1 dephospho-CoA kinase -
  AX767_RS05270 (AX767_05270) - 1036838..1038328 (+) 1491 WP_068629278.1 MBOAT family protein -
  AX767_RS05275 (AX767_05275) - 1038332..1039366 (+) 1035 WP_068629280.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44377.00 Da        Isoelectric Point: 9.6976

>NTDB_id=172025 AX767_RS05255 WP_068629271.1 1033949..1035169(+) (pilC) [Variovorax sp. PAMC 28711 strain PAMC28711]
MATATSTRTLKEFVFEWEGKDRNGKAVRGEVRAAGENQVQASLRRQGVLASKIKKRRMRGGKSIKPKDIAIFTRQLATMM
KAGVPLLQAFDIVGRGNANPNVARLLNDIRSDVETGTSLSAAFRKFPRYFDNLYCNLVEAGEAAGILEELLDRLATYMEK
TEAIKSKIKSALMYPTSVVIVAFVVVAIIMIFVIPAFKQVFSSFGADLPAPTLIVMAISEVFVAYWWLIFGVIGGGIYFF
MQAWRRNERVQKFMDRLLLRVPIFGTLIDKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNSVYADATAKIQQEVSTG
TSLTSAMTNANLFPSMVLQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=172025 AX767_RS05255 WP_068629271.1 1033949..1035169(+) (pilC) [Variovorax sp. PAMC 28711 strain PAMC28711]
ATGGCCACCGCCACATCGACACGCACGCTCAAAGAATTCGTCTTCGAATGGGAAGGCAAGGACCGCAATGGCAAGGCGGT
CCGCGGTGAGGTCCGGGCTGCGGGTGAAAACCAGGTGCAGGCTTCACTTCGCAGGCAAGGTGTTCTCGCGTCGAAGATCA
AAAAGCGCCGGATGCGCGGTGGCAAGTCGATCAAACCGAAAGACATCGCGATCTTCACGCGACAGCTCGCGACCATGATG
AAGGCCGGCGTGCCGTTGCTGCAGGCCTTCGACATCGTCGGTCGCGGCAATGCGAATCCGAACGTCGCCCGACTGCTCAA
CGACATTCGAAGCGATGTCGAAACTGGTACCTCGCTTTCAGCCGCTTTCCGCAAGTTCCCCAGATACTTCGACAACCTCT
ATTGCAATCTGGTGGAAGCCGGTGAAGCCGCCGGCATTCTGGAAGAACTGCTCGACCGCCTCGCCACCTACATGGAGAAA
ACCGAAGCGATCAAGTCGAAGATCAAGTCGGCACTGATGTATCCGACATCCGTGGTGATCGTCGCGTTCGTCGTGGTGGC
CATCATCATGATCTTCGTGATTCCGGCGTTCAAACAGGTGTTCAGTTCGTTTGGCGCAGACCTGCCGGCGCCCACCCTGA
TCGTGATGGCCATCAGCGAAGTTTTTGTCGCTTATTGGTGGCTGATCTTCGGCGTCATCGGCGGCGGCATCTATTTCTTC
ATGCAGGCCTGGCGGCGCAACGAACGCGTTCAGAAGTTCATGGACCGCCTGCTGCTTCGCGTGCCGATCTTCGGAACCCT
GATCGACAAGTCGTGTGTGGCCCGCTGGACCCGCACGCTCGCGACGATGTTCGCCGCCGGGGTGCCACTGGTCGAAGCGC
TCGACTCCGTCGGCGGGGCTTCGGGAAATTCGGTCTATGCCGACGCCACAGCGAAGATTCAGCAAGAGGTGTCGACAGGC
ACCAGCCTGACCAGCGCGATGACCAACGCCAACCTGTTCCCGTCGATGGTCCTGCAGATGACCGCGATCGGCGAAGAATC
CGGCTCCATCGATCACATGCTGGGCAAGGCGGCGGACTTCTACGAGTCCGAGGTCGACGACATGGTCGCCGGCCTGTCCA
GCTTGATGGAGCCCATCATCATCGTGTTTCTGGGCGTGATCATCGGCGGCATCGTCGTGTCGATGTACCTCCCGATTTTC
AAGCTCGGCCAAGTCGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A126Z9K0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.465

99.507

0.532
  pilG Neisseria gonorrhoeae MS11

51.768

97.537

0.505
  pilG Neisseria meningitidis 44/76-A

51.515

97.537

0.502
  pilC Acinetobacter baylyi ADP1

51.005

98.03

0.5
  pilC Legionella pneumophila strain ERS1305867

48.995

98.03

0.48
  pilC Acinetobacter baumannii D1279779

49.118

97.783

0.48
  pilC Vibrio cholerae strain A1552

42.054

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.05

99.015

0.397
  pilC Thermus thermophilus HB27

37.799

100

0.389

Multiple sequence alignment