Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AVL56_RS15210 Genome accession   NZ_CP014322
Coordinates   3545808..3547019 (+) Length   403 a.a.
NCBI ID   WP_062087987.1    Uniprot ID   -
Organism   Alteromonas stellipolaris strain R10SW13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3540808..3552019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVL56_RS15185 (AVL56_15185) ampE 3541522..3542391 (-) 870 WP_057789984.1 beta-lactamase regulator AmpE -
  AVL56_RS15190 (AVL56_15190) ampD 3542451..3543023 (-) 573 WP_062087981.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AVL56_RS15195 (AVL56_15195) - 3543537..3544067 (+) 531 WP_157076093.1 retropepsin-like aspartic protease family protein -
  AVL56_RS15200 (AVL56_15200) nadC 3544086..3544940 (+) 855 WP_062087983.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AVL56_RS15205 (AVL56_15205) - 3545306..3545716 (+) 411 WP_062087985.1 pilin -
  AVL56_RS15210 (AVL56_15210) pilC 3545808..3547019 (+) 1212 WP_062087987.1 type II secretion system F family protein Machinery gene
  AVL56_RS15215 (AVL56_15215) pilD 3547131..3548051 (+) 921 WP_062087989.1 prepilin peptidase Machinery gene
  AVL56_RS15220 (AVL56_15220) coaE 3548087..3548695 (+) 609 WP_062089102.1 dephospho-CoA kinase -
  AVL56_RS15225 (AVL56_15225) zapD 3548862..3549614 (+) 753 WP_057789972.1 cell division protein ZapD -
  AVL56_RS15230 (AVL56_15230) yacG 3549656..3549883 (+) 228 WP_057789970.1 DNA gyrase inhibitor YacG -
  AVL56_RS15235 (AVL56_15235) - 3549894..3550772 (+) 879 WP_057789967.1 aspartoacylase -
  AVL56_RS15240 (AVL56_15240) mutT 3550880..3551275 (-) 396 WP_062087991.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43996.72 Da        Isoelectric Point: 9.8603

>NTDB_id=170309 AVL56_RS15210 WP_062087987.1 3545808..3547019(+) (pilC) [Alteromonas stellipolaris strain R10SW13]
MAKVATTFIWQGKDRKGNKLKGEISATSLSEAKNLLRRQGISANRVKKFAKPLFGSREKKITAADISVFSRQIATMLSAG
VTLIQSLDMVAQGHAKASMRKLLNEIANEVRSGNPLSNSLRKHPEYFDDLYCDLVYTGEQSGALETIYDRIATYKEKSEA
LKSKIKKAMFYPIAVVVVAFIVTTILLVFVVPQFEEIFSGFGAELPAFTLFVLAISNFVQNYGIFIGVGIFFAGYLFMRA
HKKSQSFRDKVDKGILKIPVIGNILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVFRDAILYIRKEVAGGMPM
FISMRATNVFPDMVTQMVAIGEESGSVEEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIIAMYLPIFEMG
NVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=170309 AVL56_RS15210 WP_062087987.1 3545808..3547019(+) (pilC) [Alteromonas stellipolaris strain R10SW13]
ATGGCTAAAGTAGCAACTACTTTTATATGGCAAGGTAAAGATCGGAAAGGGAATAAGCTTAAGGGAGAAATATCAGCTAC
ATCCCTATCGGAAGCAAAAAACTTATTACGACGCCAAGGTATATCAGCCAATAGAGTTAAAAAATTTGCAAAACCGTTAT
TTGGTTCTAGAGAGAAAAAAATTACTGCTGCAGATATATCTGTTTTTTCTCGTCAAATAGCCACTATGCTTTCTGCTGGC
GTAACACTTATTCAATCGTTAGATATGGTTGCACAAGGTCATGCTAAAGCTTCAATGCGAAAATTGCTCAATGAAATTGC
CAATGAAGTACGCTCTGGAAACCCGCTTTCAAACTCACTCCGTAAACACCCTGAATATTTCGATGACCTATATTGCGACT
TGGTTTACACCGGAGAACAGTCCGGTGCTTTAGAGACCATTTACGACCGAATCGCCACCTATAAAGAGAAGTCTGAAGCA
CTTAAATCGAAAATTAAAAAAGCGATGTTTTATCCTATTGCTGTAGTGGTGGTCGCATTTATTGTAACCACTATCTTACT
GGTTTTCGTTGTGCCTCAATTTGAAGAAATCTTCAGCGGTTTTGGTGCCGAGCTTCCTGCATTTACGCTATTCGTACTCG
CTATTTCAAATTTTGTTCAAAATTACGGTATTTTCATAGGCGTAGGTATTTTCTTCGCTGGTTACTTATTTATGCGTGCT
CATAAGAAGAGCCAAAGCTTTCGCGATAAAGTTGATAAAGGCATACTTAAAATTCCAGTTATCGGAAACATTCTCAAAAA
AGCCAGTATCGCGCGATTTACTCGCACCCTCGCAACTACTTTTGCTGCCGGTGTACCTTTAATTGGCGCACTTGAATCGG
CTGCTGGCGCGTCGGGCAATGCGGTATTTAGAGACGCTATCTTATATATTAGAAAAGAAGTGGCTGGCGGTATGCCAATG
TTTATCTCCATGCGCGCCACCAATGTATTTCCCGATATGGTCACGCAGATGGTCGCCATTGGTGAAGAATCTGGCTCGGT
TGAGGAAATGCTCAGTAAAATAGCAACAATATATGAAGCCGAAGTAGATGATATGGTCGACGGCTTAACCAGCTTGCTTG
AGCCAATGATCATGGCTGTGCTAGGTGTGGTGATTGGTGGACTTATTATCGCCATGTACCTTCCCATATTTGAAATGGGT
AATGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.794

98.759

0.581
  pilC Legionella pneumophila strain ERS1305867

53.401

98.511

0.526
  pilC Acinetobacter baylyi ADP1

52.475

100

0.526
  pilC Acinetobacter baumannii D1279779

52.605

100

0.526
  pilC Vibrio cholerae strain A1552

46.212

98.263

0.454
  pilC Vibrio campbellii strain DS40M4

44.612

99.007

0.442
  pilG Neisseria meningitidis 44/76-A

43.424

100

0.434
  pilG Neisseria gonorrhoeae MS11

43.176

100

0.432
  pilC Thermus thermophilus HB27

36.409

99.504

0.362

Multiple sequence alignment