Detailed information NTG0170310

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AVL56_RS15215
• Genome accession: NZ_CP014322
• Coordinates: 3547131..3548051 (+)
• Length: 306 a.a.
• NCBI ID: WP_062087989.1
• Uniprot ID: -
• Organism: Alteromonas stellipolaris strain R10SW13
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3542131..3553051

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVL56_RS15190 (AVL56_15190)	ampD	3542451..3543023 (-)	573	WP_062087981.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
AVL56_RS15195 (AVL56_15195)	-	3543537..3544067 (+)	531	WP_157076093.1	retropepsin-like aspartic protease family protein	-
AVL56_RS15200 (AVL56_15200)	nadC	3544086..3544940 (+)	855	WP_062087983.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AVL56_RS15205 (AVL56_15205)	-	3545306..3545716 (+)	411	WP_062087985.1	pilin	-
AVL56_RS15210 (AVL56_15210)	pilC	3545808..3547019 (+)	1212	WP_062087987.1	type II secretion system F family protein	Machinery gene
AVL56_RS15215 (AVL56_15215)	pilD	3547131..3548051 (+)	921	WP_062087989.1	prepilin peptidase	Machinery gene
AVL56_RS15220 (AVL56_15220)	coaE	3548087..3548695 (+)	609	WP_062089102.1	dephospho-CoA kinase	-
AVL56_RS15225 (AVL56_15225)	zapD	3548862..3549614 (+)	753	WP_057789972.1	cell division protein ZapD	-
AVL56_RS15230 (AVL56_15230)	yacG	3549656..3549883 (+)	228	WP_057789970.1	DNA gyrase inhibitor YacG	-
AVL56_RS15235 (AVL56_15235)	-	3549894..3550772 (+)	879	WP_057789967.1	aspartoacylase	-
AVL56_RS15240 (AVL56_15240)	mutT	3550880..3551275 (-)	396	WP_062087991.1	8-oxo-dGTP diphosphatase MutT	-

Sequence

Protein

• Length: 306 a.a.
• Molecular weight: 34034.22 Da
• Isoelectric Point: 7.1601

>NTDB_id=170310 AVL56_RS15215 WP_062087989.1 3547131..3548051(+) (pilD) [Alteromonas stellipolaris strain R10SW13]
MEAILLTSQLYPWLFYLFVFVVSLMVGSFLNVVIHRLPIMMENSWKQEYASYFSETDSDATDNKKNAALEASAQTSPETF
NLAKPDSTCPSCGHKIRAWENIPIISYLFLRGKCSNCKTPISIRYPLVELFTALTCTFAAYYFGPTPQAIWAVIFTYILI
ALIFIDLDKMLLPDQLTLPLLWLGLILSTQSIFVGPVDAIIGAAAGYLSLWSVFWLFKIVTGKEGMGYGDFKILAALGAF
TGWQGLPIIILLSSIVGAIAGIAIMLFQNKGKSLAIPFGPYLAVAGWITLFYKDTIITHYIKWALQ

Nucleotide

• Length: 921 bp

>NTDB_id=170310 AVL56_RS15215 WP_062087989.1 3547131..3548051(+) (pilD) [Alteromonas stellipolaris strain R10SW13]
ATGGAAGCGATATTGCTTACCAGCCAATTATACCCGTGGTTATTCTACCTATTTGTTTTTGTAGTGAGTTTAATGGTAGG
AAGCTTTTTAAATGTGGTTATTCATCGCTTGCCCATTATGATGGAAAACAGTTGGAAGCAGGAATACGCCAGTTACTTTA
GTGAAACTGATAGCGATGCAACAGATAACAAGAAAAACGCGGCTCTAGAAGCTAGTGCACAAACTTCCCCTGAAACGTTT
AATTTAGCCAAGCCAGATAGCACCTGTCCTAGTTGCGGTCACAAAATTCGGGCATGGGAAAATATCCCTATCATTAGCTA
TTTATTCCTTCGCGGGAAATGTTCAAATTGTAAAACCCCTATTTCTATTCGCTATCCGTTAGTAGAGTTATTCACTGCCC
TAACCTGTACATTCGCCGCCTATTATTTTGGCCCAACACCGCAAGCAATATGGGCGGTGATATTTACTTATATTCTTATT
GCCTTAATTTTTATCGATTTAGATAAAATGTTGCTTCCTGATCAACTTACCCTACCCTTACTTTGGCTTGGTTTAATACT
TAGCACACAATCCATTTTTGTAGGCCCTGTTGACGCTATCATTGGTGCCGCCGCCGGATATTTGAGTTTATGGTCTGTAT
TCTGGTTGTTTAAAATAGTCACCGGAAAGGAAGGCATGGGATATGGCGACTTCAAAATATTGGCCGCCCTTGGTGCTTTC
ACAGGCTGGCAGGGCTTGCCTATCATCATTTTACTGTCTTCAATTGTAGGGGCTATTGCCGGTATTGCCATTATGCTATT
CCAAAATAAAGGCAAATCATTGGCTATCCCCTTCGGGCCATATCTTGCCGTCGCAGGTTGGATAACACTCTTTTATAAAG
ACACGATTATTACCCACTATATAAAATGGGCGCTACAGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-143)

• Type IV leader peptidase family (Peptidase_A24) (154-262)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.559	96.405	0.516
pilD	Vibrio cholerae strain A1552	52.56	95.752	0.503
pilD	Acinetobacter nosocomialis M2	48.084	93.791	0.451
pilD	Acinetobacter baumannii D1279779	48.084	93.791	0.451
pilD	Neisseria gonorrhoeae MS11	45.675	94.444	0.431