Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD/cglD   Type   Machinery gene
Locus tag   AXE83_RS09330 Genome accession   NZ_CP014264
Coordinates   1996028..1996462 (-) Length   144 a.a.
NCBI ID   WP_060956238.1    Uniprot ID   A0A0X8JZJ4
Organism   Streptococcus sp. oral taxon 431 strain F0610 (5-114)     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1991028..2001462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE83_RS09305 (AXE83_09305) - 1992218..1993924 (-) 1707 WP_060956235.1 ABC transporter ATP-binding protein -
  AXE83_RS09310 (AXE83_09310) - 1994116..1994817 (-) 702 WP_049509191.1 histidine phosphatase family protein -
  AXE83_RS09315 (AXE83_09315) comGG 1994927..1995361 (-) 435 WP_060956236.1 competence type IV pilus minor pilin ComGG -
  AXE83_RS09320 (AXE83_09320) comGF/cglF 1995339..1995800 (-) 462 WP_060956237.1 competence type IV pilus minor pilin ComGF Machinery gene
  AXE83_RS09325 (AXE83_09325) comGE/cglE 1995763..1996065 (-) 303 WP_049509188.1 competence type IV pilus minor pilin ComGE Machinery gene
  AXE83_RS09330 (AXE83_09330) comGD/cglD 1996028..1996462 (-) 435 WP_060956238.1 competence type IV pilus minor pilin ComGD Machinery gene
  AXE83_RS09335 (AXE83_09335) comGC/cglC 1996425..1996748 (-) 324 WP_060956239.1 competence type IV pilus major pilin ComGC Machinery gene
  AXE83_RS09340 (AXE83_09340) comGB/cglB 1996749..1997792 (-) 1044 WP_083501012.1 competence type IV pilus assembly protein ComGB Machinery gene
  AXE83_RS09345 (AXE83_09345) comGA/cglA/cilD 1997713..1998654 (-) 942 WP_060956241.1 competence type IV pilus ATPase ComGA Machinery gene
  AXE83_RS09350 (AXE83_09350) - 1998712..1999089 (-) 378 WP_007555701.1 DUF1033 family protein -
  AXE83_RS09355 (AXE83_09355) - 1999227..2000285 (-) 1059 WP_060956242.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16302.86 Da        Isoelectric Point: 10.5486

>NTDB_id=170028 AXE83_RS09330 WP_060956238.1 1996028..1996462(-) (comGD/cglD) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
MQNKRQVKQLRISAFTMLESLLVLGIVSLLALGLSSSVQSTFAAVEEQIFFMEFEELYRETQKRSLASQQKINLILEERS
IGNGYQKLAIPKGIQLQSNQSITFDKAGGNSSLASVRFQTRKEVVRYQLYLGNGKIKRIQEAKN

Nucleotide


Download         Length: 435 bp        

>NTDB_id=170028 AXE83_RS09330 WP_060956238.1 1996028..1996462(-) (comGD/cglD) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
ATGCAAAACAAAAGACAAGTCAAACAGTTGCGGATTAGTGCTTTTACTATGTTAGAAAGTTTATTGGTCTTAGGGATAGT
CAGTCTGTTAGCCTTGGGTTTGTCAAGTTCAGTTCAATCCACTTTTGCGGCTGTGGAAGAACAAATTTTCTTTATGGAGT
TTGAGGAACTTTATCGAGAAACCCAGAAGCGAAGTCTGGCTAGTCAGCAGAAGATCAACTTGATTTTGGAAGAGAGAAGT
ATTGGAAATGGCTATCAGAAATTAGCCATCCCTAAAGGGATTCAACTACAGTCCAATCAGTCAATCACCTTTGATAAGGC
TGGAGGAAATTCGTCTCTTGCAAGTGTGAGATTTCAAACAAGGAAAGAAGTAGTTCGCTACCAACTATATCTAGGAAATG
GAAAGATTAAACGTATTCAAGAAGCAAAAAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8JZJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD/cglD Streptococcus mitis NCTC 12261

76.389

100

0.764
  comGD/cglD Streptococcus mitis SK321

78.195

92.361

0.722
  comGD/cglD Streptococcus pneumoniae Rx1

78.195

92.361

0.722
  comGD/cglD Streptococcus pneumoniae D39

78.195

92.361

0.722
  comGD/cglD Streptococcus pneumoniae R6

78.195

92.361

0.722
  comGD/cglD Streptococcus pneumoniae TIGR4

77.444

92.361

0.715
  comYD Streptococcus gordonii str. Challis substr. CH1

56.391

92.361

0.521
  comYD Streptococcus mutans UA159

50.382

90.972

0.458
  comYD Streptococcus mutans UA140

50.382

90.972

0.458

Multiple sequence alignment