Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL468_RS18240 Genome accession   NZ_CP014134
Coordinates   1901319..1902428 (-) Length   369 a.a.
NCBI ID   WP_104974653.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1896319..1907428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS18210 (AL468_09625) hemF 1896778..1897695 (-) 918 WP_104974651.1 oxygen-dependent coproporphyrinogen oxidase -
  AL468_RS18215 (AL468_09630) - 1897743..1898300 (-) 558 WP_046874602.1 L-threonylcarbamoyladenylate synthase -
  AL468_RS18220 (AL468_09635) purE 1898500..1898985 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL468_RS18225 (AL468_09640) - 1898990..1900123 (+) 1134 WP_104974652.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL468_RS18230 (AL468_09645) - 1900189..1900758 (-) 570 WP_104971082.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  AL468_RS18235 (AL468_09650) - 1900837..1901316 (-) 480 WP_005379074.1 DUF494 family protein -
  AL468_RS18240 (AL468_09655) dprA 1901319..1902428 (-) 1110 WP_104974653.1 DNA-processing protein DprA Machinery gene
  AL468_RS18245 (AL468_09660) - 1902412..1903506 (-) 1095 WP_104974654.1 LysM peptidoglycan-binding domain-containing protein -
  AL468_RS18250 (AL468_09665) def 1903645..1904163 (+) 519 WP_005379068.1 peptide deformylase -
  AL468_RS18255 (AL468_09670) fmt 1904197..1905144 (+) 948 WP_104974655.1 methionyl-tRNA formyltransferase -
  AL468_RS18260 (AL468_09675) rsmB 1905225..1906508 (+) 1284 WP_025628789.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40187.94 Da        Isoelectric Point: 6.8307

>NTDB_id=168568 AL468_RS18240 WP_104974653.1 1901319..1902428(-) (dprA) [Vibrio diabolicus strain FDAARGOS_99]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLVRDTPRNIVNFSPEQLQQLGLTTKQIKAWASTDKEVDACLRWLEASTNHH
ILTLTDPLYPPQLKQIVAPPPLLFVEGSPTFLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAKGKTIAVLGSGLENIYPARHRGLAQRVIENGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAERSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=168568 AL468_RS18240 WP_104974653.1 1901319..1902428(-) (dprA) [Vibrio diabolicus strain FDAARGOS_99]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGTAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTAAAGCTTGGGCTTCAACAGATAAAGAAGTTGATGCCTGTTTAAGGTGGCTTGAGGCTTCTACAAACCATCAT
ATCCTGACACTGACTGACCCGCTTTATCCACCTCAACTCAAACAAATCGTTGCGCCGCCTCCGTTGTTATTTGTTGAGGG
GAGTCCCACCTTTTTATCGCAACCACAAATTGCCATGGTGGGTAGCCGAAATGCGAGTATTGATGGCTTACAGCATGCAC
GCCACTTTGCCGCAGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGCCATGCGCAT
GATGGTGCGTTGCAAGCCAAAGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAAAATGGGGCTTTGGTGTCTGAGTTTCGCCCCAACGCCAAGCCGCGCCCGGAAAACT
TCCCGCGTCGAAACCGCATTATTAGCGGATTATCGCTAGGTGTGTTAGTTGTGGAAGCGGCGGAAAGGAGTGGCTCGTTA
ATTACTGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTGTTTGCGCTGCCAGCTTCGATAAATGCCCCTAATGCCAGCGG
TGGCAACCAGTTGATACGTCATGGTGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCTTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.469

100

0.835
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.237

100

0.466
  dprA Haemophilus influenzae Rd KW20

45.533

94.038

0.428
  dprA Legionella pneumophila strain ERS1305867

47.095

88.618

0.417
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.949

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.696

100

0.382
  dprA Acinetobacter baylyi ADP1

39.701

90.786

0.36

Multiple sequence alignment