Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL552_RS13110 Genome accession   NZ_CP014094
Coordinates   2479176..2480399 (+) Length   407 a.a.
NCBI ID   WP_104969783.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2474176..2485399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS13090 (AL552_21245) ampD 2475214..2475765 (-) 552 WP_005396682.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AL552_RS13095 (AL552_21250) nadC 2475858..2476745 (+) 888 WP_104969780.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AL552_RS13100 (AL552_21255) pilA 2477013..2477462 (+) 450 WP_104969781.1 pilin Machinery gene
  AL552_RS13105 (AL552_21260) pilB 2477466..2479151 (+) 1686 WP_104969782.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL552_RS13110 (AL552_21265) pilC 2479176..2480399 (+) 1224 WP_104969783.1 type II secretion system F family protein Machinery gene
  AL552_RS13115 (AL552_21270) pilD 2480464..2481333 (+) 870 WP_012841418.1 A24 family peptidase Machinery gene
  AL552_RS13120 (AL552_21275) coaE 2481334..2481948 (+) 615 WP_047008979.1 dephospho-CoA kinase -
  AL552_RS13125 (AL552_21280) zapD 2481976..2482716 (+) 741 WP_012841416.1 cell division protein ZapD -
  AL552_RS13130 (AL552_21285) yacG 2482864..2483058 (+) 195 WP_005396692.1 DNA gyrase inhibitor YacG -
  AL552_RS13135 (AL552_21290) rplS 2483715..2484068 (-) 354 WP_005379971.1 50S ribosomal protein L19 -
  AL552_RS13140 (AL552_21295) trmD 2484110..2484853 (-) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45347.51 Da        Isoelectric Point: 10.3992

>NTDB_id=168328 AL552_RS13110 WP_104969783.1 2479176..2480399(+) (pilC) [Vibrio diabolicus strain FDAARGOS_96]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RIFSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=168328 AL552_RS13110 WP_104969783.1 2479176..2480399(+) (pilC) [Vibrio diabolicus strain FDAARGOS_96]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTCACCCGTCAGATTTCGACGATGTTG
ATAACTGGTGTGCCCTTAGTTCAGGCTTTAAAATTGGTCTCAGAAAACCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAGGCAGGTACACCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCAACAGGTGAGCAATCCGGTAACTTAGCGGAAGTGTTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAGCAGCTTCGTGCGAAAGTGATCAAAGCACTGATTTACCCAGCCATGGTAGTACTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCGTGGTTTACCAGGC
AAGTGTTAGATCTTTCCGCCTGGACACAAAACTGGAGCCCATTTATAGCACTAGGCTCTATCAGTCTATTCATCTCAGCG
AGAATCTTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAATCGCTCTGTGCTTAAATTTCCTGTCCTCGGACCCGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAATTGTAATGTGTTCCCTGAATTGGTGTTACAAATGGTTATGATCGGTGAAGAATC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGATAACACTGTCGACAACCTTAGTA
AAATTCTAGAGCCGCTAATTATCGTTTTTTTAGGCATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

87.224

100

0.872
  pilC Vibrio cholerae strain A1552

73.529

100

0.737
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria gonorrhoeae MS11

40.247

99.509

0.4
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment