Detailed information NTG0168329

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AL552_RS13115
• Genome accession: NZ_CP014094
• Coordinates: 2480464..2481333 (+)
• Length: 289 a.a.
• NCBI ID: WP_012841418.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain FDAARGOS_96
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2475464..2486333

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL552_RS13095 (AL552_21250)	nadC	2475858..2476745 (+)	888	WP_104969780.1	carboxylating nicotinate-nucleotide diphosphorylase	-
AL552_RS13100 (AL552_21255)	pilA	2477013..2477462 (+)	450	WP_104969781.1	pilin	Machinery gene
AL552_RS13105 (AL552_21260)	pilB	2477466..2479151 (+)	1686	WP_104969782.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AL552_RS13110 (AL552_21265)	pilC	2479176..2480399 (+)	1224	WP_104969783.1	type II secretion system F family protein	Machinery gene
AL552_RS13115 (AL552_21270)	pilD	2480464..2481333 (+)	870	WP_012841418.1	A24 family peptidase	Machinery gene
AL552_RS13120 (AL552_21275)	coaE	2481334..2481948 (+)	615	WP_047008979.1	dephospho-CoA kinase	-
AL552_RS13125 (AL552_21280)	zapD	2481976..2482716 (+)	741	WP_012841416.1	cell division protein ZapD	-
AL552_RS13130 (AL552_21285)	yacG	2482864..2483058 (+)	195	WP_005396692.1	DNA gyrase inhibitor YacG	-
AL552_RS13135 (AL552_21290)	rplS	2483715..2484068 (-)	354	WP_005379971.1	50S ribosomal protein L19	-
AL552_RS13140 (AL552_21295)	trmD	2484110..2484853 (-)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AL552_RS13145 (AL552_21300)	rimM	2484881..2485429 (-)	549	WP_005379964.1	ribosome maturation factor RimM	-
AL552_RS13150 (AL552_21305)	rpsP	2485458..2485706 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32523.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=168329 AL552_RS13115 WP_012841418.1 2480464..2481333(+) (pilD) [Vibrio diabolicus strain FDAARGOS_96]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=168329 AL552_RS13115 WP_012841418.1 2480464..2481333(+) (pilD) [Vibrio diabolicus strain FDAARGOS_96]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AATTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464