Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AL552_RS13170 Genome accession   NZ_CP014094
Coordinates   2489828..2490346 (-) Length   172 a.a.
NCBI ID   WP_048625973.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_96     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2484828..2495346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL552_RS13145 (AL552_21300) rimM 2484881..2485429 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  AL552_RS13150 (AL552_21305) rpsP 2485458..2485706 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  AL552_RS13155 (AL552_21310) ffh 2485916..2487298 (-) 1383 WP_104969784.1 signal recognition particle protein -
  AL552_RS13160 (AL552_21315) - 2487523..2488317 (+) 795 WP_047008980.1 inner membrane protein YpjD -
  AL552_RS13165 (AL552_21320) - 2488444..2489712 (+) 1269 WP_047008981.1 HlyC/CorC family transporter -
  AL552_RS13170 (AL552_21325) luxS 2489828..2490346 (-) 519 WP_048625973.1 S-ribosylhomocysteine lyase Regulator
  AL552_RS13175 (AL552_21330) - 2490431..2490997 (-) 567 WP_226977501.1 hypothetical protein -
  AL552_RS13180 (AL552_21335) gshA 2491061..2492629 (-) 1569 WP_085342644.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19051.75 Da        Isoelectric Point: 4.6153

>NTDB_id=168330 AL552_RS13170 WP_048625973.1 2489828..2490346(-) (luxS) [Vibrio diabolicus strain FDAARGOS_96]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNSDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQSKIPELNEYQCGTAAMHSLEEAQQIAKSILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=168330 AL552_RS13170 WP_048625973.1 2489828..2490346(-) (luxS) [Vibrio diabolicus strain FDAARGOS_96]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGCATGAATGCACCGGCAGTGCGAGTGGCGAAGACCATGCAGAC
CCCAAAAGGGGACACGATTACTGTCTTCGATTTACGCTTTACCGCGCCAAACAAAGACATCCTTTCTGAAAAAGGTATCC
ATACACTAGAGCACCTTTATGCAGGTTTTATGCGCAATCACCTAAACAGCGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACCGGCTTTTACATGAGCCTGATCGGCACTCCATCAGAGCAGCAAGTAGCGGATGCTTGGATTGCGGC
AATGGAAGACGTACTAAAGGTAGAAAGCCAGAGCAAGATCCCTGAACTCAACGAATACCAATGTGGTACGGCAGCGATGC
ACTCTTTAGAAGAAGCACAACAAATCGCGAAGAGCATTTTGGATGCTGGTGTATCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAATCGATGCTAAAAGAGCTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86

Multiple sequence alignment