Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | AL552_RS04840 | Genome accession | NZ_CP014094 |
| Coordinates | 834945..835229 (+) | Length | 94 a.a. |
| NCBI ID | WP_192943705.1 | Uniprot ID | - |
| Organism | Vibrio diabolicus strain FDAARGOS_96 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 829945..840229
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL552_RS04830 (AL552_12990) | - | 832388..832660 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| AL552_RS04835 (AL552_12995) | ppiD | 832860..834719 (+) | 1860 | WP_012842021.1 | peptidylprolyl isomerase | - |
| AL552_RS04840 (AL552_13000) | comEA | 834945..835229 (+) | 285 | WP_192943705.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| AL552_RS04845 (AL552_13005) | rrtA | 835328..835879 (-) | 552 | WP_192943683.1 | rhombosortase | - |
| AL552_RS04850 (AL552_13010) | - | 835883..836497 (+) | 615 | WP_104969204.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| AL552_RS04855 (AL552_13015) | - | 836504..837826 (-) | 1323 | WP_005390538.1 | anti-phage deoxyguanosine triphosphatase | - |
| AL552_RS04860 (AL552_13020) | yfbR | 837842..838426 (-) | 585 | WP_170892960.1 | 5'-deoxynucleotidase | - |
| AL552_RS04865 (AL552_13025) | - | 838517..839731 (-) | 1215 | WP_005390543.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10308.91 Da Isoelectric Point: 5.1423
>NTDB_id=168316 AL552_RS04840 WP_192943705.1 834945..835229(+) (comEA) [Vibrio diabolicus strain FDAARGOS_96]
MKWILTLCLFVFAPFSMAADSASDKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSASDKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=168316 AL552_RS04840 WP_192943705.1 834945..835229(+) (comEA) [Vibrio diabolicus strain FDAARGOS_96]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCGCCTTTTAGCATGGCTGCGGATTCAGCCTCTGACAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATTGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCGCCTTTTAGCATGGCTGCGGATTCAGCCTCTGACAAATATGA
AGGAATTGAAATTACCGTAAATATCAACACGGCCTCTGCTGAAGAAATAGCGACCATGTTGAAAGGTATTGGTGAGAAGA
AAGCGCAGAGTATCGTGGACTACCGCGAGGAGCATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATT
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
89.362 |
100 |
0.894 |
| comEA | Vibrio campbellii strain DS40M4 |
74.737 |
100 |
0.755 |
| comEA | Vibrio cholerae C6706 |
61.957 |
97.872 |
0.606 |
| comEA | Vibrio cholerae strain A1552 |
61.957 |
97.872 |
0.606 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
48.148 |
86.17 |
0.415 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
58.065 |
65.957 |
0.383 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
38.889 |
95.745 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |