Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL475_RS17735 Genome accession   NZ_CP014033
Coordinates   2037919..2039145 (-) Length   408 a.a.
NCBI ID   WP_104966495.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2032919..2044145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS17710 (AL475_09750) parC 2033038..2035311 (+) 2274 WP_044366754.1 DNA topoisomerase IV subunit A -
  AL475_RS17715 (AL475_09755) yacG 2035362..2035559 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  AL475_RS17720 (AL475_09760) zapD 2035614..2036354 (-) 741 WP_024374405.1 cell division protein ZapD -
  AL475_RS17725 (AL475_09765) coaE 2036387..2036995 (-) 609 WP_104966494.1 dephospho-CoA kinase -
  AL475_RS17730 (AL475_09770) pilD 2036998..2037867 (-) 870 WP_044366750.1 A24 family peptidase Machinery gene
  AL475_RS17735 (AL475_09775) pilC 2037919..2039145 (-) 1227 WP_104966495.1 type II secretion system F family protein Machinery gene
  AL475_RS17740 (AL475_09780) pilB 2039181..2040873 (-) 1693 Protein_1826 type IV-A pilus assembly ATPase PilB -
  AL475_RS17745 (AL475_09785) pilA 2040884..2041306 (-) 423 WP_020332201.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AL475_RS17750 (AL475_09790) nadC 2041539..2042426 (-) 888 WP_104966496.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AL475_RS17755 (AL475_09795) ampD 2042579..2043130 (+) 552 WP_032081227.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AL475_RS17760 (AL475_09800) fldB 2043135..2043656 (-) 522 WP_020430452.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44698.97 Da        Isoelectric Point: 10.5318

>NTDB_id=167664 AL475_RS17735 WP_104966495.1 2037919..2039145(-) (pilC) [Vibrio fluvialis strain FDAARGOS_100]
MKPTKGPELKNYRWKGINSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNRVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAAAFIASLGLVFG
IKAARKKSFVVRLKTSQLSLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=167664 AL475_RS17735 WP_104966495.1 2037919..2039145(-) (pilC) [Vibrio fluvialis strain FDAARGOS_100]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCATCAACAGCACTGGCAAGAAAGTCGCAGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATAAAAAAGGGTA
GCGTGTCGGTTCTGACTCGTCTCACCAATCGGGTCAAAACTAAAGACATCACCATCCTAACCCGCCAGCTTGCCACCATG
CTGACCACCGGGGTGCCAATTGTGCAAGCACTCAAATTGGTCGGCGATAATCATCGTAAAGCCGAGATGAAATCAATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGTACCGCCAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAGCGCCTTGCCACCTATCGGGAA
AAAAGCGAACAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAAGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTGTCGCACGGGGTACAAGCCTACAGTGCAGCGGCATTCATCGCGTCATTGGGCTTGGTGTTTGGC
ATCAAAGCGGCGCGGAAAAAATCCTTCGTCGTCCGTCTTAAAACCAGCCAGCTCAGCCTGCGTTTTCCCATCATTGGCGG
TGTGCTTGCCAAAGCCGCAATTGCCAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAAACCACTGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCGGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

87.255

100

0.873
  pilC Vibrio campbellii strain DS40M4

72.593

99.265

0.721
  pilC Acinetobacter baumannii D1279779

41.422

100

0.414
  pilC Legionella pneumophila strain ERS1305867

41.604

97.794

0.407
  pilC Acinetobacter baylyi ADP1

41.058

97.304

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.152

97.059

0.39
  pilG Neisseria gonorrhoeae MS11

39.599

97.794

0.387
  pilG Neisseria meningitidis 44/76-A

39.098

97.794

0.382

Multiple sequence alignment