Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AL475_RS17730 Genome accession   NZ_CP014033
Coordinates   2036998..2037867 (-) Length   289 a.a.
NCBI ID   WP_044366750.1    Uniprot ID   -
Organism   Vibrio fluvialis strain FDAARGOS_100     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2031998..2042867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL475_RS17710 (AL475_09750) parC 2033038..2035311 (+) 2274 WP_044366754.1 DNA topoisomerase IV subunit A -
  AL475_RS17715 (AL475_09755) yacG 2035362..2035559 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  AL475_RS17720 (AL475_09760) zapD 2035614..2036354 (-) 741 WP_024374405.1 cell division protein ZapD -
  AL475_RS17725 (AL475_09765) coaE 2036387..2036995 (-) 609 WP_104966494.1 dephospho-CoA kinase -
  AL475_RS17730 (AL475_09770) pilD 2036998..2037867 (-) 870 WP_044366750.1 A24 family peptidase Machinery gene
  AL475_RS17735 (AL475_09775) pilC 2037919..2039145 (-) 1227 WP_104966495.1 type II secretion system F family protein Machinery gene
  AL475_RS17740 (AL475_09780) pilB 2039181..2040873 (-) 1693 Protein_1826 type IV-A pilus assembly ATPase PilB -
  AL475_RS17745 (AL475_09785) pilA 2040884..2041306 (-) 423 WP_020332201.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AL475_RS17750 (AL475_09790) nadC 2041539..2042426 (-) 888 WP_104966496.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 32288.40 Da        Isoelectric Point: 6.4655

>NTDB_id=167663 AL475_RS17730 WP_044366750.1 2036998..2037867(-) (pilD) [Vibrio fluvialis strain FDAARGOS_100]
MDIFNFYPWLFPTLATVLGLIIGSFLNVVIYRLPKIMEREWRQECAESFPEYHIEPPQGILTLSMPRSTCPHCDTPIRVI
DNIPVLSWLLLRGKCSNCQGPISARYPLIELLTASCSLLIALQFGFSWFAVAMLFFTYTLIAATFIDFDTMLLPDQLTLP
LLWAGIALALAGISPISLQDAVIGAIAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILMSSLVGL
VFGLIQLRLQKRGIDKAFPFGPYLAIAGWLSLLFGHDIAGWYFHSVLGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=167663 AL475_RS17730 WP_044366750.1 2036998..2037867(-) (pilD) [Vibrio fluvialis strain FDAARGOS_100]
ATGGACATTTTTAATTTTTACCCCTGGCTGTTTCCTACGCTGGCGACAGTGCTGGGGTTAATTATCGGCAGTTTCCTCAA
TGTGGTGATTTATCGCCTGCCGAAAATCATGGAGCGCGAGTGGCGTCAGGAGTGTGCGGAATCCTTTCCCGAGTATCATA
TTGAGCCGCCTCAGGGCATTTTAACGCTGAGCATGCCACGTTCCACCTGCCCGCATTGCGATACGCCGATCCGGGTTATC
GACAACATTCCGGTACTGAGTTGGCTATTGCTGCGTGGTAAATGCTCGAATTGTCAGGGCCCTATCAGCGCGCGTTATCC
GCTGATTGAACTGCTGACGGCTTCATGCAGCCTCTTGATTGCGCTGCAATTTGGTTTTAGCTGGTTTGCCGTTGCCATGC
TGTTCTTTACCTATACGCTGATTGCGGCAACCTTCATTGATTTCGATACGATGCTGCTGCCGGATCAGCTTACTCTGCCC
CTACTCTGGGCAGGTATTGCACTGGCGTTGGCGGGCATCAGCCCGATTTCGCTACAAGATGCGGTGATTGGTGCGATAGC
AGGTTATCTGTCGTTATGGTCAGTGTACTGGCTGTTTAAGCTACTGACAGGCAAAGAAGGCATGGGCTATGGCGACTTTA
AGCTGTTAGCGGCTCTCGGTGCCTGGCTGGGATGGCAGCAACTACCGATCATCATTCTGATGTCATCTCTGGTTGGACTG
GTGTTCGGCCTCATTCAACTGCGTCTGCAAAAGCGCGGCATTGATAAAGCATTTCCCTTCGGGCCTTATCTGGCGATTGC
AGGCTGGTTATCCCTGCTGTTTGGCCATGACATTGCGGGTTGGTATTTTCATTCGGTATTAGGATTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(135-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

78.819

99.654

0.785
  pilD Vibrio campbellii strain DS40M4

78.125

99.654

0.779
  pilD Acinetobacter baumannii D1279779

53.285

94.81

0.505
  pilD Acinetobacter nosocomialis M2

52.92

94.81

0.502
  pilD Neisseria gonorrhoeae MS11

50.929

93.08

0.474

Multiple sequence alignment