Detailed information NTG0167402

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: AL501_RS02690
• Genome accession: NZ_CP014023
• Coordinates: 570495..570809 (-)
• Length: 104 a.a.
• NCBI ID: WP_002459016.1
• Uniprot ID: -
• Organism: Staphylococcus lugdunensis strain FDAARGOS_143
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 565495..575809

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL501_RS02655 (AL501_02610)	gcvPA	566068..567417 (-)	1350	WP_002478134.1	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	-
AL501_RS02660 (AL501_02615)	gcvT	567434..568525 (-)	1092	WP_037544364.1	glycine cleavage system aminomethyltransferase GcvT	-
AL501_RS02665 (AL501_02620)	-	568695..569213 (-)	519	WP_002459021.1	shikimate kinase	-
AL501_RS12995 (AL501_02630)	-	569367..569825 (-)	459	WP_014533299.1	competence type IV pilus minor pilin ComGF	-
AL501_RS02680 (AL501_02635)	-	569788..570081 (-)	294	WP_002459018.1	hypothetical protein	-
AL501_RS02685 (AL501_02640)	comGD	570068..570562 (-)	495	WP_225306455.1	competence type IV pilus minor pilin ComGD	-
AL501_RS02690 (AL501_02645)	comGC	570495..570809 (-)	315	WP_002459016.1	competence type IV pilus major pilin ComGC	Machinery gene
AL501_RS02695 (AL501_02650)	comGB	570824..571888 (-)	1065	WP_002478130.1	competence type IV pilus assembly protein ComGB	-
AL501_RS02700 (AL501_02655)	comGA	571860..572834 (-)	975	WP_002478129.1	competence type IV pilus ATPase ComGA	Machinery gene
AL501_RS02705 (AL501_02660)	-	572881..573504 (-)	624	WP_002459013.1	MBL fold metallo-hydrolase	-
AL501_RS02710 (AL501_02665)	-	573508..573831 (-)	324	WP_002459012.1	MTH1187 family thiamine-binding protein	-
AL501_RS02715 (AL501_02670)	-	573831..574817 (-)	987	WP_002478128.1	ROK family glucokinase	-
AL501_RS02720 (AL501_02675)	-	574814..575017 (-)	204	WP_002459010.1	YqgQ family protein	-

Sequence

Protein

• Length: 104 a.a.
• Molecular weight: 11373.37 Da
• Isoelectric Point: 8.2727

>NTDB_id=167402 AL501_RS02690 WP_002459016.1 570495..570809(-) (comGC) [Staphylococcus lugdunensis strain FDAARGOS_143]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN

Nucleotide

• Length: 315 bp

>NTDB_id=167402 AL501_RS02690 WP_002459016.1 570495..570809(-) (comGC) [Staphylococcus lugdunensis strain FDAARGOS_143]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (7-31)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Staphylococcus aureus MW2	82.353	98.077	0.808
comGC	Staphylococcus aureus N315	82.353	98.077	0.808
comYC	Streptococcus gordonii str. Challis substr. CH1	45.918	94.231	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	44.554	97.115	0.433
comGC	Bacillus subtilis subsp. subtilis str. 168	46.154	87.5	0.404
comGC/cglC	Streptococcus pneumoniae R6	48.235	81.731	0.394
comGC/cglC	Streptococcus pneumoniae Rx1	48.235	81.731	0.394
comGC/cglC	Streptococcus pneumoniae D39	48.235	81.731	0.394
comGC	Lactococcus lactis subsp. cremoris KW2	50.633	75.962	0.385
comGC/cglC	Streptococcus mitis SK321	51.282	75	0.385
comGC/cglC	Streptococcus mitis NCTC 12261	51.282	75	0.385
comYC	Streptococcus mutans UA140	48.75	76.923	0.375
comYC	Streptococcus mutans UA159	48.75	76.923	0.375