Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AL499_RS01220 | Genome accession | NZ_CP014022 |
| Coordinates | 249948..250262 (+) | Length | 104 a.a. |
| NCBI ID | WP_002459016.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain FDAARGOS_141 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 244948..255262
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL499_RS01190 (AL499_01190) | - | 245740..245943 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| AL499_RS01195 (AL499_01195) | - | 245940..246926 (+) | 987 | WP_002491907.1 | ROK family glucokinase | - |
| AL499_RS01200 (AL499_01200) | - | 246926..247249 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| AL499_RS01205 (AL499_01205) | - | 247253..247876 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| AL499_RS01210 (AL499_01210) | comGA | 247923..248897 (+) | 975 | WP_002491905.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AL499_RS01215 (AL499_01215) | comGB | 248869..249933 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| AL499_RS01220 (AL499_01220) | comGC | 249948..250262 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AL499_RS01225 (AL499_01225) | comGD | 250195..250689 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| AL499_RS01230 (AL499_01230) | - | 250676..250969 (+) | 294 | WP_002459018.1 | hypothetical protein | - |
| AL499_RS01235 (AL499_01235) | - | 251031..251390 (+) | 360 | WP_002459019.1 | competence type IV pilus minor pilin ComGF | - |
| AL499_RS01245 (AL499_01245) | - | 251544..252062 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| AL499_RS01250 (AL499_01250) | gcvT | 252232..253323 (+) | 1092 | WP_037540763.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AL499_RS01255 (AL499_01255) | gcvPA | 253340..254689 (+) | 1350 | WP_002478134.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11373.37 Da Isoelectric Point: 8.2727
>NTDB_id=167372 AL499_RS01220 WP_002459016.1 249948..250262(+) (comGC) [Staphylococcus lugdunensis strain FDAARGOS_141]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=167372 AL499_RS01220 WP_002459016.1 249948..250262(+) (comGC) [Staphylococcus lugdunensis strain FDAARGOS_141]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
82.353 |
98.077 |
0.808 |
| comGC | Staphylococcus aureus N315 |
82.353 |
98.077 |
0.808 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.918 |
94.231 |
0.433 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.554 |
97.115 |
0.433 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.154 |
87.5 |
0.404 |
| comGC/cglC | Streptococcus pneumoniae R6 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae D39 |
48.235 |
81.731 |
0.394 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
75.962 |
0.385 |
| comGC/cglC | Streptococcus mitis SK321 |
51.282 |
75 |
0.385 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.282 |
75 |
0.385 |
| comYC | Streptococcus mutans UA140 |
48.75 |
76.923 |
0.375 |
| comYC | Streptococcus mutans UA159 |
48.75 |
76.923 |
0.375 |