Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AT984_RS14795 Genome accession   NZ_CP013692
Coordinates   3413993..3415219 (+) Length   408 a.a.
NCBI ID   WP_058720753.1    Uniprot ID   A0A0U3EKN3
Organism   Paucibacter sp. KCTC 42545     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3408993..3420219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT984_RS14780 (AT984_14780) - 3409939..3410304 (-) 366 WP_058720750.1 response regulator -
  AT984_RS14785 (AT984_14785) - 3410503..3412047 (+) 1545 WP_197418115.1 methyl-accepting chemotaxis protein -
  AT984_RS14790 (AT984_14790) pilF 3412287..3413954 (+) 1668 WP_082680045.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AT984_RS14795 (AT984_14795) pilC 3413993..3415219 (+) 1227 WP_058720753.1 type II secretion system F family protein Machinery gene
  AT984_RS14800 (AT984_14800) - 3415228..3416157 (+) 930 WP_058720754.1 A24 family peptidase -
  AT984_RS14805 (AT984_14805) coaE 3416154..3416759 (+) 606 WP_058720755.1 dephospho-CoA kinase -
  AT984_RS14810 (AT984_14810) zapD 3416873..3417628 (+) 756 WP_058722348.1 cell division protein ZapD -
  AT984_RS14815 (AT984_14815) - 3417640..3417843 (+) 204 WP_058720756.1 DNA gyrase inhibitor YacG -
  AT984_RS14820 (AT984_14820) - 3417832..3418443 (-) 612 WP_058720757.1 HAD family phosphatase -
  AT984_RS14825 (AT984_14825) pgi 3418461..3420092 (-) 1632 WP_058720758.1 glucose-6-phosphate isomerase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44452.08 Da        Isoelectric Point: 9.7557

>NTDB_id=164103 AT984_RS14795 WP_058720753.1 3413993..3415219(+) (pilC) [Paucibacter sp. KCTC 42545]
MATSTTTAAKRTSEFTYEWEGKDRNGKLVRGEIRAGGEAMVSAQLRRQGILVNKVKKRRVSGGKSITQKDIAVFTRQLAT
MMRAGVPLLQSFEIVGRGSTNPRLTRLLNDIRGDVETGTSLSTSLRKHPMYFDALYCNLVEAGEAAGILEALLDRLAIYQ
EKTVALKNKIKSALTYPIGVLVVAFVVVAVIMIFVVPAFEDVFKSFGAELPAPTMMVIAMSKFFVSYWWAIFSTIGGGIY
FFIQSWKRSVNMQKAMDRLLLKIPVFGDLLYKSAVARWTRTLSTMFAAGVPLVEALDSVGGAAGNAVFAEATEKIQRDVS
TGTALTTSMTATGIFPTMVLQMAAIGEESGSLDHMLSKSAEFYEDEVDEAVKALSSLMEPFIIVILGTIIGGIVVAMYLP
IFKLGQVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=164103 AT984_RS14795 WP_058720753.1 3413993..3415219(+) (pilC) [Paucibacter sp. KCTC 42545]
ATGGCGACATCGACAACAACAGCGGCCAAACGAACGAGTGAGTTCACCTATGAGTGGGAGGGCAAGGACCGCAATGGCAA
ACTGGTCCGCGGGGAAATCCGCGCCGGTGGCGAGGCCATGGTCAGCGCCCAGCTGCGCCGCCAGGGCATTCTGGTCAACA
AGGTCAAGAAGCGCCGCGTCAGCGGTGGCAAGTCGATCACGCAAAAAGACATTGCCGTCTTCACGCGCCAACTGGCCACC
ATGATGCGCGCCGGTGTGCCCTTGCTGCAGTCCTTCGAGATCGTCGGCCGAGGCAGCACCAACCCGCGCCTGACTCGCCT
GCTCAACGACATCCGCGGCGATGTGGAAACAGGCACCAGCTTGTCCACCTCCTTGCGCAAGCATCCGATGTACTTCGACG
CGCTGTACTGCAATCTGGTCGAAGCCGGTGAAGCCGCCGGTATCTTGGAAGCGCTGCTGGACCGCTTGGCCATCTACCAA
GAAAAAACGGTGGCATTGAAGAACAAGATCAAGTCAGCGCTGACCTACCCCATCGGCGTCTTGGTCGTGGCCTTCGTCGT
GGTGGCCGTGATCATGATCTTCGTGGTGCCTGCGTTTGAGGATGTGTTCAAGTCCTTCGGCGCCGAACTGCCCGCGCCGA
CGATGATGGTGATCGCCATGTCGAAGTTCTTCGTCTCCTACTGGTGGGCGATCTTCAGCACCATCGGCGGCGGCATCTAC
TTCTTCATCCAGTCCTGGAAGCGCTCGGTCAATATGCAAAAAGCCATGGATCGCTTACTGCTGAAGATCCCGGTTTTCGG
TGACCTGCTCTACAAATCCGCCGTGGCGCGCTGGACCCGCACCTTGTCGACCATGTTCGCCGCCGGCGTGCCACTGGTGG
AAGCGCTTGACTCGGTGGGCGGCGCCGCCGGCAATGCCGTGTTTGCCGAAGCGACCGAGAAGATTCAGCGCGATGTGTCC
ACCGGTACCGCGCTGACCACCTCGATGACCGCCACCGGCATCTTCCCCACCATGGTCTTGCAGATGGCGGCCATCGGTGA
GGAATCCGGCTCGCTCGACCACATGCTGTCCAAATCGGCCGAGTTCTACGAGGACGAGGTGGACGAGGCCGTCAAAGCCC
TGTCCAGCCTGATGGAGCCCTTCATCATCGTGATCCTGGGCACCATCATCGGCGGCATCGTGGTCGCCATGTATCTGCCC
ATCTTCAAGCTCGGCCAGGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3EKN3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.941

99.02

0.554
  pilG Neisseria meningitidis 44/76-A

53.75

98.039

0.527
  pilG Neisseria gonorrhoeae MS11

53.75

98.039

0.527
  pilC Legionella pneumophila strain ERS1305867

53.266

97.549

0.52
  pilC Acinetobacter baumannii D1279779

50.503

97.549

0.493
  pilC Acinetobacter baylyi ADP1

49.14

99.755

0.49
  pilC Vibrio cholerae strain A1552

42.317

97.304

0.412
  pilC Thermus thermophilus HB27

40.199

98.775

0.397
  pilC Vibrio campbellii strain DS40M4

39.401

98.284

0.387

Multiple sequence alignment