Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AT705_RS09715 Genome accession   NZ_CP013611
Coordinates   2198162..2199394 (+) Length   410 a.a.
NCBI ID   WP_058796437.1    Uniprot ID   A0A0U3HPL1
Organism   Pseudoalteromonas rubra strain SCSIO 6842     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2193162..2204394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AT705_RS09695 (AT705_09695) ampE 2194785..2195669 (-) 885 WP_058796433.1 beta-lactamase regulator AmpE -
  AT705_RS09700 (AT705_09700) ampD 2195681..2196217 (-) 537 WP_058796434.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AT705_RS09705 (AT705_09705) nadC 2196407..2197246 (+) 840 WP_058796435.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AT705_RS26010 (AT705_09710) - 2197644..2198108 (+) 465 WP_058796436.1 pilin -
  AT705_RS09715 (AT705_09715) pilC 2198162..2199394 (+) 1233 WP_058796437.1 type II secretion system F family protein Machinery gene
  AT705_RS09720 (AT705_09720) pilD 2199417..2200292 (+) 876 WP_058796438.1 prepilin peptidase Machinery gene
  AT705_RS09725 (AT705_09725) coaE 2200296..2200907 (+) 612 WP_058796439.1 dephospho-CoA kinase -
  AT705_RS09730 (AT705_09730) pilB 2201016..2202692 (+) 1677 WP_058796440.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AT705_RS09735 (AT705_09735) yacG 2202764..2203006 (+) 243 WP_058796441.1 DNA gyrase inhibitor YacG -
  AT705_RS25485 (AT705_09740) - 2203270..2203779 (-) 510 WP_058796442.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44480.21 Da        Isoelectric Point: 9.6917

>NTDB_id=163211 AT705_RS09715 WP_058796437.1 2198162..2199394(+) (pilC) [Pseudoalteromonas rubra strain SCSIO 6842]
MNQPDKNSAKVDTFIWVGVSARGKRLQGELTGTSVALVKAQLRKQGITPSKVKRKPKPLFGFSSTQTITPKDIAVVTRQI
ATMLTAGVALVQALDMIASGAKNKSVSKLITHIADEVKAGQPLAKSLRSHPRYFDELYCDLVESGEQSGALDRIFDRVAL
YKEKAEALKSKIKKAMFYPIAVLSVALIVTSILLIFVVPQFEEIFTGFGAELPGFTLMVLGISEFMQEYWWLFLIGLGGA
GYAYKEALQRSPAVRHFNDRMVLRIPAIGEILKKAAVARYARTLSTTFAAGVPLVNALDSAAGASGNIIYKNAILDIKGE
VSSGNQMNWAMRNARIFPDMVVQMVSIGEESGALDSMLAKVASIYEQEVDDAVDGLSSLLEPMIMVILGVLVGGLIIAMY
LPIFQLGTVI

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=163211 AT705_RS09715 WP_058796437.1 2198162..2199394(+) (pilC) [Pseudoalteromonas rubra strain SCSIO 6842]
ATGAACCAACCCGACAAAAACTCCGCCAAAGTCGATACCTTTATCTGGGTCGGCGTCAGCGCTCGTGGTAAACGTTTGCA
AGGCGAACTCACTGGCACCAGTGTGGCCCTGGTGAAAGCGCAACTGCGCAAGCAGGGGATCACGCCATCCAAAGTTAAGC
GTAAACCTAAACCTTTGTTCGGGTTCAGTAGCACACAAACAATCACCCCCAAAGACATTGCCGTTGTGACCCGGCAAATA
GCCACTATGCTGACCGCTGGTGTGGCCTTGGTGCAGGCATTGGACATGATTGCTTCAGGTGCCAAAAACAAAAGTGTCAG
CAAACTCATCACCCACATTGCCGATGAAGTAAAAGCAGGCCAGCCGCTGGCCAAATCCCTGCGTAGTCATCCCAGATATT
TTGATGAATTATATTGCGACTTAGTTGAATCCGGTGAGCAATCGGGTGCACTAGACCGTATCTTTGACCGGGTAGCCTTG
TATAAAGAAAAAGCAGAGGCACTGAAGTCGAAAATCAAGAAGGCGATGTTTTACCCGATAGCCGTACTGTCGGTTGCTCT
AATCGTGACCTCCATCTTATTGATTTTTGTGGTCCCACAATTTGAAGAGATTTTCACCGGATTTGGCGCTGAATTACCGG
GTTTTACACTGATGGTGCTGGGTATTTCTGAGTTTATGCAGGAGTACTGGTGGCTATTCCTTATTGGCCTGGGCGGTGCG
GGCTATGCCTACAAAGAGGCCCTGCAACGCAGCCCCGCTGTTCGCCATTTTAACGACCGTATGGTACTGCGGATCCCGGC
AATTGGCGAAATCCTGAAAAAGGCAGCCGTTGCCCGTTATGCCAGAACCCTGTCCACCACCTTTGCAGCAGGCGTACCTT
TAGTCAATGCGCTAGATTCCGCCGCTGGCGCTTCCGGCAATATCATCTACAAAAATGCGATTTTGGATATTAAGGGCGAG
GTCAGTTCAGGTAACCAAATGAACTGGGCGATGCGCAATGCCAGGATTTTTCCCGACATGGTAGTGCAAATGGTCTCCAT
TGGTGAAGAATCCGGAGCACTAGACAGTATGCTGGCCAAGGTTGCCAGTATTTATGAGCAGGAAGTGGATGATGCAGTCG
ATGGACTGTCCTCATTACTTGAACCTATGATCATGGTGATCCTGGGCGTGCTGGTTGGCGGCTTGATTATCGCCATGTAT
TTACCTATATTCCAGCTCGGCACCGTCATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-402)

Type II secretion system (T2SS), protein F (T2SSF)

(77-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3HPL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

60.1

97.805

0.588
  pilC Legionella pneumophila strain ERS1305867

55.172

99.024

0.546
  pilC Acinetobacter baylyi ADP1

52.346

98.78

0.517
  pilC Acinetobacter baumannii D1279779

51.605

98.78

0.51
  pilC Vibrio campbellii strain DS40M4

43.457

98.78

0.429
  pilC Vibrio cholerae strain A1552

43.75

97.561

0.427
  pilG Neisseria gonorrhoeae MS11

43.532

98.049

0.427
  pilG Neisseria meningitidis 44/76-A

43.284

98.049

0.424

Multiple sequence alignment