Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   A6L32_RS10615 Genome accession   NZ_CP016627
Coordinates   2056134..2056607 (-) Length   157 a.a.
NCBI ID   WP_002248276.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22718     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051134..2061607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6L32_RS14870 - 2051576..2051701 (-) 126 Protein_1979 IS5/IS1182 family transposase -
  A6L32_RS10600 (A6L32_10600) dapC 2051789..2052976 (-) 1188 WP_002220680.1 succinyldiaminopimelate transaminase -
  A6L32_RS10605 (A6L32_10605) dut 2053052..2053504 (-) 453 WP_002220679.1 dUTP diphosphatase -
  A6L32_RS10610 (A6L32_10610) - 2053647..2054075 (+) 429 Protein_1982 AzlC family ABC transporter permease -
  A6L32_RS10615 (A6L32_10615) pilX 2056134..2056607 (-) 474 WP_002248276.1 PilX family type IV pilin Machinery gene
  A6L32_RS10620 (A6L32_10620) pilK 2056612..2057205 (-) 594 WP_002248275.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6L32_RS10625 (A6L32_10625) pilJ 2057184..2058122 (-) 939 WP_002248274.1 PilW family protein Machinery gene
  A6L32_RS10630 (A6L32_10630) pilV 2058119..2058730 (-) 612 WP_002248273.1 type IV pilus modification protein PilV Regulator
  A6L32_RS10635 (A6L32_10635) pilH 2058754..2059431 (-) 678 WP_002248272.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6L32_RS10640 (A6L32_10640) dnaB 2059586..2060992 (-) 1407 WP_002248271.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17528.29 Da        Isoelectric Point: 9.4344

>NTDB_id=160909 A6L32_RS10615 WP_002248276.1 2056134..2056607(-) (pilX) [Neisseria meningitidis strain M22718]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASARAHLETLSSDVGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=160909 A6L32_RS10615 WP_002248276.1 2056134..2056607(-) (pilX) [Neisseria meningitidis strain M22718]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCGAGCCCATTTGGAGACCTTGTCCTCAGATGTCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

99.363

100

0.994
  pilL Neisseria gonorrhoeae MS11

86.624

100

0.866

Multiple sequence alignment