Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CPter91_RS22425 Genome accession   NZ_CP013234
Coordinates   5045137..5046357 (+) Length   406 a.a.
NCBI ID   WP_061944416.1    Uniprot ID   A0A127QAU7
Organism   Collimonas pratensis strain Ter91     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5040137..5051357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter91_RS22405 (CPter91_4885) ispB 5040656..5041606 (+) 951 WP_099047317.1 octaprenyl diphosphate synthase -
  CPter91_RS22415 (CPter91_4887) - 5041821..5043101 (+) 1281 WP_061944410.1 HlyC/CorC family transporter -
  CPter91_RS22420 (CPter91_4889) pilB 5043400..5045121 (+) 1722 WP_061944413.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CPter91_RS22425 (CPter91_4890) pilC 5045137..5046357 (+) 1221 WP_061944416.1 type II secretion system F family protein Machinery gene
  CPter91_RS22430 (CPter91_4891) pilD 5046357..5047223 (+) 867 WP_061944419.1 prepilin peptidase Machinery gene
  CPter91_RS22435 (CPter91_4892) coaE 5047230..5047883 (+) 654 WP_061944422.1 dephospho-CoA kinase -
  CPter91_RS22440 (CPter91_4893) zapD 5048006..5048761 (+) 756 WP_061944425.1 cell division protein ZapD -
  CPter91_RS22445 (CPter91_4894) yacG 5048784..5048972 (+) 189 WP_061944428.1 DNA gyrase inhibitor YacG -
  CPter91_RS22450 (CPter91_4895) mutT 5049002..5049418 (-) 417 WP_061944431.1 8-oxo-dGTP diphosphatase MutT -
  CPter91_RS22455 (CPter91_4896) - 5049430..5050308 (-) 879 WP_061944434.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44543.65 Da        Isoelectric Point: 10.1425

>NTDB_id=160909 CPter91_RS22425 WP_061944416.1 5045137..5046357(+) (pilC) [Collimonas pratensis strain Ter91]
MATAASSRQVKELVYLWEGKDKKGKVVRGELRAGSETVVNVTMRRQGILVTKVKKKTFRSGKKITDKDLSLLTRQLATMM
KAGVPLLQSFDIVAKGHANPSVSKLVNDIRSDVETGTSLSQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLERLAIYKEK
TLAIKSKIKSAMFYPVSIMAVAFIVTAVIMIWVVPAFKQVFSSFGADLPAMTLFVMGISDFMVANWYIIFPAIFTGLYLF
FQSWRRSLKMQRFMDRVLLKVPIFGSVIRKATIARWTRTLATMFAAGVPLVESLDSVGGASGNAVYLDATKKIQNEVSTG
TSLTTAMENANVFPNMVTQMVSIGEESGSLDQMLGKVADFYEAEVDDAVASLSSLMEPLIMVILGVLIGGLVIAMYLPIF
KLGTVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=160909 CPter91_RS22425 WP_061944416.1 5045137..5046357(+) (pilC) [Collimonas pratensis strain Ter91]
ATGGCAACAGCGGCAAGCTCACGTCAGGTCAAGGAATTGGTGTATCTGTGGGAAGGCAAGGATAAAAAAGGCAAGGTTGT
GCGCGGAGAATTGCGCGCAGGTAGCGAGACTGTGGTCAATGTCACCATGCGCCGACAAGGGATCCTGGTCACCAAAGTCA
AAAAGAAGACCTTCCGTAGCGGCAAGAAAATTACCGACAAGGACCTTTCCCTGCTTACTCGCCAACTGGCTACTATGATG
AAGGCCGGCGTGCCCTTGCTACAGTCTTTCGATATCGTAGCCAAGGGCCATGCCAATCCATCAGTATCGAAACTGGTCAA
TGACATCCGTAGCGACGTTGAAACCGGTACCAGCCTGAGCCAGGCCTTCCGCAAGTTCCCGTTATATTTCGACCCCCTGT
TCTGCAACCTGGTTGGCGCTGGCGAACAGGCCGGCATTCTTGAAGATTTGCTGGAGCGGCTGGCAATCTATAAAGAAAAG
ACCCTTGCCATCAAAAGCAAGATTAAATCTGCGATGTTTTATCCCGTATCTATTATGGCAGTGGCCTTTATCGTTACCGC
AGTTATCATGATCTGGGTGGTTCCTGCATTCAAGCAGGTATTCTCAAGCTTTGGTGCAGACCTACCCGCGATGACCCTTT
TCGTAATGGGCATCTCCGATTTCATGGTGGCTAACTGGTACATTATATTCCCCGCTATATTCACCGGCCTATATTTGTTC
TTTCAGTCATGGAGGCGTTCACTCAAAATGCAACGCTTCATGGACCGCGTATTACTAAAGGTACCGATTTTTGGTTCGGT
AATCCGGAAAGCAACGATTGCTCGCTGGACCCGTACATTGGCAACCATGTTTGCTGCAGGTGTGCCATTGGTAGAGTCGC
TTGATTCGGTTGGGGGAGCATCGGGGAACGCAGTCTATCTGGACGCGACCAAGAAAATCCAGAACGAAGTAAGCACGGGC
ACCAGTCTGACTACTGCAATGGAAAATGCCAATGTGTTCCCCAACATGGTGACGCAAATGGTTTCCATCGGCGAAGAATC
GGGCTCCCTCGACCAGATGCTGGGCAAGGTGGCCGATTTCTACGAAGCAGAAGTCGACGACGCGGTAGCGTCACTGTCCA
GCCTGATGGAACCTTTGATCATGGTGATCCTGGGCGTCCTGATCGGCGGCCTTGTGATTGCCATGTACCTGCCTATTTTC
AAGCTGGGTACGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(73-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QAU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.97

99.507

0.527
  pilC Legionella pneumophila strain ERS1305867

53.015

98.03

0.52
  pilC Acinetobacter baylyi ADP1

50.735

100

0.51
  pilG Neisseria gonorrhoeae MS11

51.889

97.783

0.507
  pilC Acinetobacter baumannii D1279779

51.889

97.783

0.507
  pilG Neisseria meningitidis 44/76-A

51.637

97.783

0.505
  pilC Vibrio cholerae strain A1552

39.798

97.783

0.389
  pilC Vibrio campbellii strain DS40M4

39.295

97.783

0.384
  pilC Thermus thermophilus HB27

36.145

100

0.369

Multiple sequence alignment