Detailed information NTG0160910

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CPter91_RS22430
• Genome accession: NZ_CP013234
• Coordinates: 5046357..5047223 (+)
• Length: 288 a.a.
• NCBI ID: WP_061944419.1
• Uniprot ID: A0A127QAY3
• Organism: Collimonas pratensis strain Ter91
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5041357..5052223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPter91_RS22415 (CPter91_4887)	-	5041821..5043101 (+)	1281	WP_061944410.1	HlyC/CorC family transporter	-
CPter91_RS22420 (CPter91_4889)	pilB	5043400..5045121 (+)	1722	WP_061944413.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CPter91_RS22425 (CPter91_4890)	pilC	5045137..5046357 (+)	1221	WP_061944416.1	type II secretion system F family protein	Machinery gene
CPter91_RS22430 (CPter91_4891)	pilD	5046357..5047223 (+)	867	WP_061944419.1	prepilin peptidase	Machinery gene
CPter91_RS22435 (CPter91_4892)	coaE	5047230..5047883 (+)	654	WP_061944422.1	dephospho-CoA kinase	-
CPter91_RS22440 (CPter91_4893)	zapD	5048006..5048761 (+)	756	WP_061944425.1	cell division protein ZapD	-
CPter91_RS22445 (CPter91_4894)	yacG	5048784..5048972 (+)	189	WP_061944428.1	DNA gyrase inhibitor YacG	-
CPter91_RS22450 (CPter91_4895)	mutT	5049002..5049418 (-)	417	WP_061944431.1	8-oxo-dGTP diphosphatase MutT	-
CPter91_RS22455 (CPter91_4896)	-	5049430..5050308 (-)	879	WP_061944434.1	ATP-binding protein	-
CPter91_RS22460 (CPter91_4897)	argJ	5050472..5051710 (-)	1239	WP_061944437.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31183.11 Da
• Isoelectric Point: 7.7374

>NTDB_id=160910 CPter91_RS22430 WP_061944419.1 5046357..5047223(+) (pilD) [Collimonas pratensis strain Ter91]
MQEGIFFLAAGSLLPTAIAAIFGLLIGSFLNVVIHRLPIMMQRESDNYVAHESGQPLPHTDRYNLVVPRSACPQCKHQIG
ALENVPVLSYLALRGKCASCKTPISARYPIVEAFTGVLSGLLIWHFGSGWAGMATLVFAYLLIAMTFIDADTQLLPDDLT
LPLLWLGLLLNISGLFVPLSDAVIGAAAGYLSLWLIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWKMLPIIILFSSLVG
AVVGLVLIIVARRGRDIPIPFGPYLAAAGLLALLYGRTITETYFNFVA

Nucleotide

• Length: 867 bp

>NTDB_id=160910 CPter91_RS22430 WP_061944419.1 5046357..5047223(+) (pilD) [Collimonas pratensis strain Ter91]
ATGCAAGAAGGTATTTTTTTCCTGGCGGCGGGGAGCCTGCTTCCCACCGCCATCGCCGCTATTTTTGGCTTACTCATCGG
TAGTTTCCTCAACGTCGTGATTCATCGGCTGCCGATCATGATGCAGCGCGAATCTGATAACTACGTGGCGCACGAAAGCG
GCCAGCCGCTGCCGCATACCGACCGCTACAATCTGGTGGTACCGCGTTCCGCCTGTCCGCAATGCAAACACCAGATCGGC
GCGCTGGAAAACGTGCCGGTGCTGAGCTATCTGGCCTTGCGCGGCAAATGCGCCTCCTGCAAGACGCCGATCTCAGCGCG
CTATCCGATCGTGGAGGCATTTACCGGCGTCCTGTCGGGGCTGCTGATCTGGCATTTCGGCAGCGGCTGGGCTGGCATGG
CGACCCTGGTCTTTGCCTACCTGCTGATCGCCATGACGTTTATCGACGCCGATACGCAGCTGCTGCCTGACGACCTGACC
CTGCCGTTGCTGTGGCTGGGCTTGCTGCTGAATATTTCCGGCTTGTTCGTACCGCTCAGCGACGCGGTGATCGGCGCCGC
CGCCGGCTACCTGAGCCTGTGGCTGATCTACTGGGCATTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTACGGCGATT
TCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGAAAATGCTCCCTATTATCATCCTGTTTTCGTCGCTGGTCGGC
GCCGTGGTCGGCCTCGTCCTGATCATCGTTGCCCGCCGTGGACGCGACATTCCTATCCCATTTGGCCCTTATCTGGCAGC
GGCCGGCTTGCTCGCGTTGCTATATGGCCGCACTATCACGGAAACTTATTTCAATTTCGTTGCCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

3D structure

• AlphaFold DB: A0A127QAY3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.458	94.097	0.531
pilD	Vibrio campbellii strain DS40M4	53.704	93.75	0.503
pilD	Neisseria gonorrhoeae MS11	53.543	88.194	0.472
pilD	Acinetobacter baumannii D1279779	46.503	99.306	0.462
pilD	Acinetobacter nosocomialis M2	45.804	99.306	0.455