Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H78_RS27430 Genome accession   NZ_CP013184
Coordinates   6036555..6037772 (+) Length   405 a.a.
NCBI ID   WP_053153924.1    Uniprot ID   -
Organism   Pseudomonas protegens strain H78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6031555..6042772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H78_RS27415 (H78_05490) - 6032095..6035013 (+) 2919 WP_077934788.1 DUF748 domain-containing protein -
  H78_RS27420 (H78_05491) - 6035224..6035580 (-) 357 WP_077934789.1 BON domain-containing protein -
  H78_RS27425 (H78_05492) - 6035809..6036225 (-) 417 WP_077934790.1 pilin -
  H78_RS27430 (H78_05493) pilC 6036555..6037772 (+) 1218 WP_053153924.1 type II secretion system F family protein Machinery gene
  H78_RS27435 (H78_05494) pilD 6037775..6038647 (+) 873 WP_053153928.1 A24 family peptidase Machinery gene
  H78_RS27440 (H78_05495) coaE 6038644..6039267 (+) 624 WP_011063523.1 dephospho-CoA kinase -
  H78_RS27445 (H78_05496) yacG 6039264..6039467 (+) 204 WP_011063524.1 DNA gyrase inhibitor YacG -
  H78_RS27450 (H78_05497) - 6039487..6039702 (-) 216 WP_011063525.1 hypothetical protein -
  H78_RS27455 (H78_05498) - 6039766..6040455 (-) 690 WP_053153931.1 energy-coupling factor ABC transporter permease -
  H78_RS27460 (H78_05499) - 6040452..6040919 (-) 468 WP_026019989.1 hypothetical protein -
  H78_RS27465 (H78_05500) - 6041063..6041692 (+) 630 WP_011063528.1 DUF1780 domain-containing protein -
  H78_RS27470 (H78_05501) - 6041882..6042055 (+) 174 WP_053153937.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43829.48 Da        Isoelectric Point: 10.5006

>NTDB_id=160462 H78_RS27430 WP_053153924.1 6036555..6037772(+) (pilC) [Pseudomonas protegens strain H78]
MAVKAPATSVYLWHGTDSQGRPLTGELSAATPALIRAQLRRQGITPTRIRRKPKGWLRLHQRVGARDIALLTRQLATLMQ
AGVPLLQSFDIIAESFEHPQMRQLLASLKRDIEAGSSLATALRRQPRHFDPLYCNLVDAGEQAGALDTLLERVATYKEKS
ENLKARLKKAMVYPLAVIGVAVVVSSILLLKVVPQFQSLFAGFNAELPLLTQWVIALSHFIQQQGALLLAAGVLGGLAAR
LAYQRSPSLRDRLDVGLLHMPLAGPLLHKSAVARYARTLATTFAAGVPLVQALDSVAGASGNPVFRQAVQRIRQQVAAGM
QLNFAMRASGVFPTMAIQMTAIGEESGTLDHLLEKVAIHYEVEVDNLVDSLTSLMEPLIMVVLGGIVGALVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=160462 H78_RS27430 WP_053153924.1 6036555..6037772(+) (pilC) [Pseudomonas protegens strain H78]
ATGGCGGTAAAAGCACCCGCGACCAGTGTCTATCTCTGGCACGGCACCGACAGCCAGGGCCGCCCCCTCACCGGAGAACT
CAGCGCCGCGACCCCGGCCCTGATCAGGGCGCAATTGCGCAGACAGGGCATCACCCCAACCCGAATCCGACGCAAACCCA
AGGGCTGGCTGCGCCTGCATCAGCGAGTAGGGGCACGGGACATTGCCCTGCTCACCCGGCAGTTGGCCACGCTGATGCAG
GCCGGGGTGCCGCTGCTGCAATCCTTCGACATCATTGCCGAAAGTTTCGAGCATCCGCAGATGCGCCAACTGCTGGCCAG
CCTCAAGCGCGACATCGAGGCCGGCTCCAGCCTGGCCACGGCATTGCGCAGACAACCGCGCCACTTCGACCCGCTGTACT
GCAATCTGGTGGACGCCGGCGAGCAGGCCGGCGCCCTGGATACCCTGCTGGAGAGAGTCGCCACCTACAAGGAAAAGAGC
GAGAACCTGAAGGCGCGGCTGAAGAAGGCCATGGTCTATCCCTTGGCGGTGATCGGCGTGGCGGTCGTGGTCAGCAGCAT
CCTGCTGCTCAAGGTGGTACCCCAGTTCCAGAGCCTGTTCGCCGGTTTCAATGCCGAGCTGCCACTGCTCACCCAGTGGG
TCATCGCTCTGTCACATTTCATCCAGCAGCAGGGGGCGCTGCTGCTGGCCGCCGGTGTGCTGGGCGGGCTTGCGGCGCGC
CTGGCCTATCAGCGCTCCCCGAGCTTGCGTGACCGCCTGGATGTCGGCCTTTTGCACATGCCCCTGGCCGGGCCACTGCT
GCACAAATCCGCGGTGGCCCGCTACGCACGGACCCTGGCCACCACCTTCGCCGCCGGCGTTCCCTTGGTGCAGGCCCTGG
ATTCAGTGGCCGGAGCCAGCGGCAACCCTGTCTTCAGGCAAGCGGTGCAACGGATCCGCCAGCAGGTCGCCGCCGGCATG
CAATTGAACTTTGCCATGCGCGCCAGCGGCGTCTTCCCGACCATGGCGATCCAGATGACCGCCATCGGCGAAGAGTCCGG
AACCCTGGATCATCTGCTGGAAAAAGTCGCGATCCATTACGAGGTCGAGGTGGACAACCTGGTGGACAGCCTGACCAGCC
TCATGGAGCCGTTGATCATGGTGGTCCTGGGGGGTATCGTCGGCGCCCTGGTGGTTGCCATGTACCTGCCTATCTTCCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.519

100

0.585
  pilC Acinetobacter baylyi ADP1

53.301

100

0.538
  pilC Acinetobacter baumannii D1279779

53.431

100

0.538
  pilC Legionella pneumophila strain ERS1305867

46.814

100

0.472
  pilC Vibrio cholerae strain A1552

43.401

97.284

0.422
  pilG Neisseria gonorrhoeae MS11

42.356

98.519

0.417
  pilG Neisseria meningitidis 44/76-A

42.462

98.272

0.417
  pilC Vibrio campbellii strain DS40M4

41.542

99.259

0.412
  pilC Thermus thermophilus HB27

38.25

98.765

0.378

Multiple sequence alignment