Detailed information NTG0160463

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: H78_RS27435
• Genome accession: NZ_CP013184
• Coordinates: 6037775..6038647 (+)
• Length: 290 a.a.
• NCBI ID: WP_053153928.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain H78
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6032775..6043647

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H78_RS27420 (H78_05491)	-	6035224..6035580 (-)	357	WP_077934789.1	BON domain-containing protein	-
H78_RS27425 (H78_05492)	-	6035809..6036225 (-)	417	WP_077934790.1	pilin	-
H78_RS27430 (H78_05493)	pilC	6036555..6037772 (+)	1218	WP_053153924.1	type II secretion system F family protein	Machinery gene
H78_RS27435 (H78_05494)	pilD	6037775..6038647 (+)	873	WP_053153928.1	A24 family peptidase	Machinery gene
H78_RS27440 (H78_05495)	coaE	6038644..6039267 (+)	624	WP_011063523.1	dephospho-CoA kinase	-
H78_RS27445 (H78_05496)	yacG	6039264..6039467 (+)	204	WP_011063524.1	DNA gyrase inhibitor YacG	-
H78_RS27450 (H78_05497)	-	6039487..6039702 (-)	216	WP_011063525.1	hypothetical protein	-
H78_RS27455 (H78_05498)	-	6039766..6040455 (-)	690	WP_053153931.1	energy-coupling factor ABC transporter permease	-
H78_RS27460 (H78_05499)	-	6040452..6040919 (-)	468	WP_026019989.1	hypothetical protein	-
H78_RS27465 (H78_05500)	-	6041063..6041692 (+)	630	WP_011063528.1	DUF1780 domain-containing protein	-
H78_RS27470 (H78_05501)	-	6041882..6042055 (+)	174	WP_053153937.1	DUF3094 family protein	-
H78_RS27475 (H78_05502)	-	6042116..6043414 (+)	1299	WP_011063529.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32238.47 Da
• Isoelectric Point: 7.0180

>NTDB_id=160463 H78_RS27435 WP_053153928.1 6037775..6038647(+) (pilD) [Pseudomonas protegens strain H78]
MPLTDALTLYPMAFVAAALVLGLIVGSFLNVLVWRLPKMLERDWRAQARDVLGLEPEPVAAPYNLMLPHSQCPHCAQAIR
PWENIPLLSYLWLRGRCAHCNSFISPRYPLTELACGLISGFIAWHFGFGWAAGLMLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFGLLISLEDALWGTVIGYLFLWSVFWLFKLLTGKEGMGHGDFKLLALFGAWGGWQILPLTLLLSSLLG
AILGTILLRLRREKTSTPIPFGPFLAIAGWIALLWGGQITDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=160463 H78_RS27435 WP_053153928.1 6037775..6038647(+) (pilD) [Pseudomonas protegens strain H78]
ATGCCCCTGACTGACGCCCTCACTCTCTACCCCATGGCCTTCGTGGCTGCGGCCCTGGTATTGGGCCTGATCGTCGGCAG
CTTTCTCAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTCGAACGCGACTGGCGAGCCCAGGCCCGCGACGTGCTGGGGC
TGGAGCCGGAACCTGTGGCTGCGCCCTATAACCTGATGCTGCCGCACTCCCAGTGCCCGCACTGTGCGCAGGCGATCCGC
CCCTGGGAAAACATTCCGCTGCTCAGTTACCTGTGGCTGCGTGGCCGCTGCGCCCACTGCAACAGCTTCATCAGCCCGCG
CTACCCGTTGACCGAACTGGCCTGCGGGCTGATCTCGGGTTTTATCGCCTGGCACTTCGGCTTCGGCTGGGCGGCCGGGC
TGATGCTGATCCTCAGTTGGGGGCTGCTGGCAATGAGCCTGATCGACGCCGATCACCAGCTGCTGCCGGATGTGCTGGTG
CTGCCACTGTTGTGGCTGGGGCTGATCGCCAACAGCTTCGGCCTGCTGATCAGCCTGGAGGATGCGCTGTGGGGGACGGT
GATCGGCTATCTGTTCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGAGGGCATGGGCCACGGTGATT
TCAAGCTGCTGGCCCTGTTCGGGGCCTGGGGCGGCTGGCAGATCCTGCCTCTGACCCTGCTGCTGTCATCCCTGTTGGGA
GCGATTCTCGGCACGATCCTGCTGCGCCTGCGCCGGGAAAAGACCTCGACGCCAATCCCCTTTGGACCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATCTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.122	96.207	0.521
pilD	Acinetobacter baumannii D1279779	51.282	94.138	0.483
pilD	Acinetobacter nosocomialis M2	51.282	94.138	0.483
pilD	Vibrio campbellii strain DS40M4	49.645	97.241	0.483
pilD	Neisseria gonorrhoeae MS11	47.037	93.103	0.438