Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AOT82_RS08235 Genome accession   NZ_CP012969
Coordinates   1946002..1947225 (+) Length   407 a.a.
NCBI ID   WP_071002607.1    Uniprot ID   A0A1D9D004
Organism   Psychrobacter sp. AntiMn-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1941002..1952225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT82_RS08220 (AOT82_1741) secG 1942062..1942370 (-) 309 WP_021814138.1 preprotein translocase subunit SecG -
  AOT82_RS08225 (AOT82_1742) tpiA 1942586..1943398 (-) 813 WP_071002605.1 triose-phosphate isomerase -
  AOT82_RS08230 (AOT82_1743) pilB 1944066..1945781 (+) 1716 WP_071002606.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AOT82_RS08235 (AOT82_1744) pilC 1946002..1947225 (+) 1224 WP_071002607.1 type II secretion system F family protein Machinery gene
  AOT82_RS08240 (AOT82_1745) pilD 1947233..1948135 (+) 903 WP_071002608.1 A24 family peptidase Machinery gene
  AOT82_RS08245 (AOT82_1746) coaE 1948239..1948925 (+) 687 WP_071002609.1 dephospho-CoA kinase -
  AOT82_RS08250 (AOT82_1747) rlmB 1948888..1949658 (-) 771 WP_071002610.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AOT82_RS08255 (AOT82_1748) - 1949905..1950240 (-) 336 WP_058023616.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44657.65 Da        Isoelectric Point: 9.7648

>NTDB_id=158662 AOT82_RS08235 WP_071002607.1 1946002..1947225(+) (pilC) [Psychrobacter sp. AntiMn-1]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKPIKAIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRKHPRYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAIKYPIAVIVVAIIVTMILLIKVVPVFSDLFESFGAELPAFTQMVVGMSEWMKAWWFILIIFIGGAIIGF
SEAKKRSKKFRDFLDRAVLKAPIFGNIAYQAIIARFARTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQQVKNDVSTG
QQLQFSIRSTNLFPSLVIQMVGIGEESGSLEDMLDKVAVYYENEVDNAVDGLTSLMEPMIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=158662 AOT82_RS08235 WP_071002607.1 1946002..1947225(+) (pilC) [Psychrobacter sp. AntiMn-1]
ATGGCAAAAGCTAAGACTGACATGCTGTTGGACTTTGTCTATGATGGCGTAAACCGACGTGGACAAAAGGTGAAAGGCGA
AACCACTAGTCGTAGCTTAGAGTTAGCCAAAGCAACTTTACGCAAGCAAGGGATCACGGTTAAAGGTATCAAGAAGAAAC
CAAAACCGCTCTACACCTTCAAAAAACCAATTAAAGCCATTGATATTGCGATTTTTGCGCGACAATTGGCAACGATGATG
AAAGCAGGTGTCCCGCTGACTCAATCTTTTGAAATTGTAGCAGATTCGCTTGATAATCCAAGTATGAAAGACTTGGTGCT
ACAAATCAAAGCTGATATCGAAGCAGGTGGCACCTTTGCTTCCGCCCTACGTAAACACCCTCGTTACTTTGATGATCTAT
TCTGCTCACTCGTCGAATCTGGTGAACAATCGGGTGCGCTAGAGACCATGCTTGAGCGTGTAGCGACTTACAAAGAAAAA
AGCGAACTACTAAAAGCAAAGATTAAGAAAGCAATAAAATATCCGATTGCTGTCATCGTAGTTGCCATTATCGTTACTAT
GATTCTACTAATAAAAGTCGTGCCTGTATTTTCAGACCTATTTGAGTCATTTGGCGCAGAGCTACCTGCTTTTACTCAAA
TGGTAGTGGGTATGTCTGAGTGGATGAAAGCATGGTGGTTTATTTTAATTATTTTTATCGGTGGGGCTATTATCGGATTT
TCAGAAGCCAAAAAACGCTCTAAAAAATTCCGTGACTTTTTAGACCGTGCGGTACTAAAAGCACCAATTTTTGGTAATAT
TGCTTATCAAGCAATTATTGCGCGTTTTGCTCGTACGCTATCTACGACTTTTGCCGCTGGTGTACCTCTCATTGATGCGC
TAGATTCTACTGCTGGTGCGACCAACAATGTCGTGTTTTATAACGCCACTCAACAGGTCAAAAATGACGTTTCTACTGGT
CAGCAACTACAGTTCTCCATACGTTCAACCAATTTATTCCCAAGTCTCGTTATTCAAATGGTGGGTATCGGCGAAGAGTC
TGGTAGCTTGGAAGACATGCTAGATAAAGTCGCTGTATACTACGAAAACGAAGTCGACAATGCCGTTGATGGTTTGACCA
GCTTAATGGAACCTATGATCATGGCTGTACTGGGTGTATTAGTTGGTGGTCTGGTCATTGCGATGTACTTACCAATCTTC
CAAATGGGCTCAGTCGTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D9D004

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

69.853

100

0.7
  pilC Acinetobacter baylyi ADP1

68.137

100

0.683
  pilC Pseudomonas stutzeri DSM 10701

63.797

97.052

0.619
  pilC Legionella pneumophila strain ERS1305867

56.642

98.034

0.555
  pilC Vibrio cholerae strain A1552

43.873

100

0.44
  pilG Neisseria gonorrhoeae MS11

43.939

97.297

0.428
  pilG Neisseria meningitidis 44/76-A

43.687

97.297

0.425
  pilC Vibrio campbellii strain DS40M4

41.895

98.526

0.413

Multiple sequence alignment