Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   APQ97_RS03745 Genome accession   NZ_CP012911
Coordinates   761063..761725 (+) Length   220 a.a.
NCBI ID   WP_002935348.1    Uniprot ID   A0AB37G4C2
Organism   Streptococcus suis strain NSUI060     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756063..766725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APQ97_RS03725 (APQ97_03715) - 756779..757708 (-) 930 WP_002937175.1 ABC transporter substrate-binding protein -
  APQ97_RS03730 (APQ97_03720) - 757721..758506 (-) 786 WP_014636900.1 ABC transporter ATP-binding protein -
  APQ97_RS03735 (APQ97_03725) - 758658..760103 (-) 1446 WP_024390938.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  APQ97_RS03740 (APQ97_03730) - 760250..760996 (+) 747 WP_014636901.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  APQ97_RS03745 (APQ97_03735) comEA/celA/cilE 761063..761725 (+) 663 WP_002935348.1 helix-hairpin-helix domain-containing protein Machinery gene
  APQ97_RS03750 (APQ97_03740) comEC/celB 761709..763946 (+) 2238 WP_002935350.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  APQ97_RS12435 (APQ97_03745) - 763963..764088 (+) 126 Protein_708 IS982 family transposase -
  APQ97_RS03760 (APQ97_03750) - 764270..764926 (+) 657 WP_002935353.1 CBS domain-containing protein -
  APQ97_RS03765 (APQ97_03755) - 765020..765847 (+) 828 WP_002935354.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23297.93 Da        Isoelectric Point: 4.0751

>NTDB_id=158207 APQ97_RS03745 WP_002935348.1 761063..761725(+) (comEA/celA/cilE) [Streptococcus suis strain NSUI060]
MDTIKTYIEMLKEYKWQIALPAVAGLLMATFLIFSQPAKSDQTGLTDFPQTAQTSSSSDLVEETSTEASEEPSQLVVDVK
GAVVKPGLYTLEADARVNDAVEAAGGLTSQADPKSINLAQKLSDEAVVYVASKDENISVVASTTASSAMSSEEKSTSQVN
LNTATEADLQTISGIGAKRATDIIAYREANGGFKSVDDLNNVSGIGDKTMESIRPYVTVE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=158207 APQ97_RS03745 WP_002935348.1 761063..761725(+) (comEA/celA/cilE) [Streptococcus suis strain NSUI060]
ATGGATACGATTAAAACTTATATAGAAATGCTTAAAGAATACAAGTGGCAAATTGCTCTGCCCGCAGTGGCTGGCTTGCT
AATGGCGACGTTCTTAATATTCAGCCAACCAGCCAAGTCTGATCAGACAGGCCTGACAGATTTTCCGCAGACCGCACAAA
CTTCTAGCAGCTCTGACTTGGTCGAGGAAACCAGTACAGAAGCAAGTGAAGAGCCCAGCCAGCTGGTTGTTGATGTCAAA
GGAGCGGTAGTAAAACCAGGACTCTACACTTTAGAAGCTGATGCGCGTGTTAATGATGCAGTTGAGGCGGCTGGTGGCTT
GACCAGTCAGGCAGACCCCAAGTCTATCAATCTGGCTCAGAAGCTCAGCGACGAAGCGGTGGTCTATGTGGCCAGCAAGG
ACGAAAACATCTCGGTGGTGGCTAGCACGACTGCTAGCTCTGCTATGTCCTCAGAAGAAAAAAGCACAAGTCAGGTCAAT
CTGAATACGGCGACCGAGGCTGACTTGCAGACCATTTCTGGTATTGGTGCCAAGCGAGCGACGGACATTATCGCCTATCG
TGAGGCCAACGGTGGCTTCAAGTCGGTGGATGACCTCAACAATGTGTCGGGCATCGGCGACAAGACTATGGAAAGCATCC
GGCCTTATGTCACGGTTGAGTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(76-130)

Helix-hairpin-helix motif (HHH_3)

(156-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

48.848

98.636

0.482
  comEA/celA/cilE Streptococcus pneumoniae Rx1

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae D39

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus pneumoniae R6

47.945

99.545

0.477
  comEA/celA/cilE Streptococcus mitis NCTC 12261

47.248

99.091

0.468
  comEA/celA/cilE Streptococcus mitis SK321

46.154

100

0.464
  comEA Streptococcus thermophilus LMD-9

59.494

71.818

0.427
  comEA Lactococcus lactis subsp. cremoris KW2

37.168

100

0.382
  comEA Bacillus subtilis subsp. subtilis str. 168

37.915

95.909

0.364

Multiple sequence alignment