Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AOT11_RS09830 Genome accession   NZ_CP012881
Coordinates   2085285..2086511 (-) Length   408 a.a.
NCBI ID   WP_017421192.1    Uniprot ID   -
Organism   Vibrio vulnificus NBRC 15645 = ATCC 27562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2080285..2091511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOT11_RS09790 (AOT11_16825) rpsP 2080386..2080634 (+) 249 WP_011079541.1 30S ribosomal protein S16 -
  AOT11_RS09795 (AOT11_16830) rimM 2080650..2081198 (+) 549 WP_017421187.1 ribosome maturation factor RimM -
  AOT11_RS09800 (AOT11_16835) trmD 2081226..2081975 (+) 750 WP_017421188.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AOT11_RS09805 (AOT11_16840) rplS 2082017..2082370 (+) 354 WP_011079544.1 50S ribosomal protein L19 -
  AOT11_RS09810 (AOT11_16845) yacG 2082682..2082876 (-) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  AOT11_RS09815 (AOT11_16850) zapD 2082939..2083679 (-) 741 WP_017421189.1 cell division protein ZapD -
  AOT11_RS09820 (AOT11_16855) coaE 2083712..2084320 (-) 609 WP_017421190.1 dephospho-CoA kinase -
  AOT11_RS09825 (AOT11_16860) pilD 2084322..2085191 (-) 870 WP_026060802.1 prepilin peptidase Machinery gene
  AOT11_RS09830 (AOT11_16865) pilC 2085285..2086511 (-) 1227 WP_017421192.1 type II secretion system F family protein Machinery gene
  AOT11_RS09835 (AOT11_16870) pilB 2086559..2088244 (-) 1686 WP_017421193.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AOT11_RS09840 (AOT11_16875) - 2088249..2088698 (-) 450 WP_176309687.1 pilin -
  AOT11_RS09845 (AOT11_16880) nadC 2088921..2089808 (-) 888 WP_017421195.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AOT11_RS09850 (AOT11_16885) ampD 2089901..2090473 (+) 573 WP_017421196.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45200.53 Da        Isoelectric Point: 10.3569

>NTDB_id=158042 AOT11_RS09830 WP_017421192.1 2085285..2086511(-) (pilC) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILASVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVVKALIYPCMVVLVALGVSYLMLTKVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSKKSPAFRLKMSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVAAMYLPI
FNLMSVMG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=158042 AOT11_RS09830 WP_017421192.1 2085285..2086511(-) (pilC) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCCGGAAAAAAAGTCTCCGGCAA
CACGCTCGCGCTTACCGAGCTTGAGGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGTAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTTCCTATTCTACAATCGCTCAAATTGGTTGCCGACAACCATCGCAAAGCTGAGATGAAATCAATCTT
AGCCAGTGTGAGCAAAGCCGTTGAAGCAGGCACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGCCTCGCTTTTTATCGGGAA
AAAAACGAGCAGTTGCGAGCAAAAGTGGTCAAGGCATTGATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGGGTCTC
TTATTTAATGCTGACCAAGGTTATTCCCGAGTTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTACCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAAGCCTACAGTAGTTGGTTTTTCATTACGTTGTTCAGCGCCATCTATTTA
CTTCGCGGTCTAAGCAAAAAATCACCCGCATTTCGCTTAAAAATGTCACGCTTGAGTTTAAAGATCCCTGTGATTGGAGG
AGTCTTATCCAAAGCAGCGATTGCCAAATTTAGCCGCACATTAGCCACCAGTTTCAGTGCGGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTGCATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCAGCC
GGAATGCCAATGTACATCGCCATGCGTAACAGCCTTGCTTTCCCAGAATTGGTACTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTCAACAAAATTGCCACCATCTATGAGTTTGAGGTGGATAACACCGTCGACAACCTCG
GTAAGATTCTCGAGCCGTTGATCATCGTCTTTCTAGGCGTTGTCGTCGGCGGATTGGTCGCCGCCATGTACCTGCCGATC
TTTAACTTAATGAGTGTTATGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78

98.039

0.765
  pilC Vibrio campbellii strain DS40M4

74.314

98.284

0.73
  pilC Pseudomonas stutzeri DSM 10701

41.584

99.02

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilC Acinetobacter baumannii D1279779

40

100

0.402
  pilG Neisseria meningitidis 44/76-A

40.796

98.529

0.402
  pilC Acinetobacter baylyi ADP1

40.852

97.794

0.4
  pilC Legionella pneumophila strain ERS1305867

40.299

98.529

0.397

Multiple sequence alignment