Detailed information NTG0158041

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AOT11_RS09825
• Genome accession: NZ_CP012881
• Coordinates: 2084322..2085191 (-)
• Length: 289 a.a.
• NCBI ID: WP_026060802.1
• Uniprot ID: -
• Organism: Vibrio vulnificus NBRC 15645 = ATCC 27562
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2079322..2090191

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOT11_RS09790 (AOT11_16825)	rpsP	2080386..2080634 (+)	249	WP_011079541.1	30S ribosomal protein S16	-
AOT11_RS09795 (AOT11_16830)	rimM	2080650..2081198 (+)	549	WP_017421187.1	ribosome maturation factor RimM	-
AOT11_RS09800 (AOT11_16835)	trmD	2081226..2081975 (+)	750	WP_017421188.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AOT11_RS09805 (AOT11_16840)	rplS	2082017..2082370 (+)	354	WP_011079544.1	50S ribosomal protein L19	-
AOT11_RS09810 (AOT11_16845)	yacG	2082682..2082876 (-)	195	WP_026060801.1	DNA gyrase inhibitor YacG	-
AOT11_RS09815 (AOT11_16850)	zapD	2082939..2083679 (-)	741	WP_017421189.1	cell division protein ZapD	-
AOT11_RS09820 (AOT11_16855)	coaE	2083712..2084320 (-)	609	WP_017421190.1	dephospho-CoA kinase	-
AOT11_RS09825 (AOT11_16860)	pilD	2084322..2085191 (-)	870	WP_026060802.1	prepilin peptidase	Machinery gene
AOT11_RS09830 (AOT11_16865)	pilC	2085285..2086511 (-)	1227	WP_017421192.1	type II secretion system F family protein	Machinery gene
AOT11_RS09835 (AOT11_16870)	pilB	2086559..2088244 (-)	1686	WP_017421193.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AOT11_RS09840 (AOT11_16875)	-	2088249..2088698 (-)	450	WP_176309687.1	pilin	-
AOT11_RS09845 (AOT11_16880)	nadC	2088921..2089808 (-)	888	WP_017421195.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32259.36 Da
• Isoelectric Point: 6.8198

>NTDB_id=158041 AOT11_RS09825 WP_026060802.1 2084322..2085191(-) (pilD) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLIAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSIVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=158041 AOT11_RS09825 WP_026060802.1 2084322..2085191(-) (pilD) [Vibrio vulnificus NBRC 15645 = ATCC 27562]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGCCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGTCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAATCGCTTGGAAGTTCGGTTATGCACCAATTACCGTAGCACTGA
TTGGGTTTACTTTGGTGTTAATCGCCGCTACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCAGGCATTGCGCTAGCGTTACTTGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
GGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTCTCTTCGATTGTCGGGTTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAACAAGGCATTGAGATGGCCTTTCCATTTGGGCCTTATTTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAATTATCTTATAGGGGCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.509	100	0.775
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter nosocomialis M2	53.986	95.502	0.516
pilD	Acinetobacter baumannii D1279779	53.986	95.502	0.516
pilD	Neisseria gonorrhoeae MS11	47.636	95.156	0.453