Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AOY20_RS05500 Genome accession   NZ_CP012808
Coordinates   1187634..1188860 (-) Length   408 a.a.
NCBI ID   WP_054580935.1    Uniprot ID   A0A0N9VY33
Organism   Acinetobacter equi strain 114     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1182634..1193860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOY20_RS05475 (AOY20_05475) - 1184013..1184336 (+) 324 WP_054580930.1 pyrimidine/purine nucleoside phosphorylase -
  AOY20_RS05480 (AOY20_05480) rlmB 1184466..1185215 (+) 750 WP_054580931.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AOY20_RS05485 (AOY20_05485) - 1185250..1186137 (+) 888 WP_081403362.1 DMT family transporter -
  AOY20_RS05490 (AOY20_05490) coaE 1186157..1186765 (-) 609 WP_054580933.1 dephospho-CoA kinase -
  AOY20_RS05495 (AOY20_05495) pilD 1186774..1187634 (-) 861 WP_054580934.1 prepilin peptidase Machinery gene
  AOY20_RS05500 (AOY20_05500) pilC 1187634..1188860 (-) 1227 WP_054580935.1 type II secretion system F family protein Machinery gene
  AOY20_RS05505 (AOY20_05505) pilB 1188885..1190666 (-) 1782 WP_054580936.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  AOY20_RS05510 (AOY20_05510) tpiA 1190947..1191738 (+) 792 WP_054580937.1 triose-phosphate isomerase -
  AOY20_RS05515 (AOY20_05515) secG 1191752..1192081 (+) 330 WP_054580938.1 preprotein translocase subunit SecG -
  AOY20_RS05545 (AOY20_05545) rimP 1193016..1193540 (+) 525 WP_054580939.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45773.33 Da        Isoelectric Point: 9.8499

>NTDB_id=157758 AOY20_RS05500 WP_054580935.1 1187634..1188860(-) (pilC) [Acinetobacter equi strain 114]
MAIKKNQMMPTYIYEGVDRKGIKLKGELPARNINLAKVTLRKQGISVKSIREKKKNVLDNLIKKRVSTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLDNPSMREVVLNIKGDVEGGHTFAEALRKYPQYFDKLFCSLIESGEQSGSLETMLDRVALYK
EKSEILKQKIKKAIKYPATVLVVAIAVTIVLMIKVIPVFEELFASFGADLPAFTKMVVGMSRWFQSFWLFLLIGMILTLI
IFIQAKRRSLKFQYFLDRFVLKMPIFGSLIYKAIIARYSRTLSTTFSAGVPLIDALESTAGATNNHVYEDAVLKIREDVA
SGQQLQFAMRRTEKFPTMAIQMVAIGEESGALDDMLDKVANYYENEVDHAVDGLTSMMEPFIMVILGILIGGLVVAMYLP
IFQMGSVL

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=157758 AOY20_RS05500 WP_054580935.1 1187634..1188860(-) (pilC) [Acinetobacter equi strain 114]
ATGGCAATCAAAAAAAATCAGATGATGCCAACATATATTTATGAAGGCGTGGATCGCAAGGGGATCAAACTAAAAGGAGA
GCTTCCTGCTCGAAATATTAACCTCGCAAAAGTAACTTTAAGAAAACAAGGAATAAGTGTTAAATCAATTCGAGAAAAGA
AAAAAAATGTACTCGACAATCTGATAAAAAAACGAGTTTCTACCCTCGATATTACTGTTTTCACACGACAACTTGCTACC
ATGATGAAAGCTGGCGTACCTCTCGTACAAGGCTTTGAAATTGTTGCTGAAGGTTTAGATAATCCTTCTATGCGTGAAGT
TGTTTTAAATATTAAAGGTGATGTCGAAGGTGGACATACTTTTGCAGAAGCACTAAGAAAGTATCCTCAATATTTTGATA
AATTATTTTGTTCACTTATTGAATCAGGAGAGCAATCTGGCTCACTCGAAACTATGCTAGATCGTGTTGCACTTTACAAA
GAAAAGAGTGAAATTCTTAAACAAAAAATTAAAAAAGCCATTAAATATCCAGCAACGGTACTGGTTGTAGCTATAGCCGT
AACCATTGTGCTTATGATTAAAGTCATTCCTGTTTTTGAAGAGCTTTTTGCTTCATTTGGTGCAGATCTTCCAGCATTTA
CTAAAATGGTGGTCGGTATGTCCCGATGGTTTCAAAGTTTTTGGCTCTTTCTTCTTATTGGAATGATTTTAACGCTGATT
ATTTTTATACAAGCAAAAAGAAGAAGTCTTAAATTTCAATATTTTTTAGATCGTTTTGTACTTAAAATGCCTATTTTCGG
AAGCCTGATTTATAAAGCCATTATTGCTCGCTATAGCCGTACACTTTCTACAACATTTTCAGCTGGTGTCCCATTAATAG
ATGCTTTAGAGTCTACTGCAGGTGCGACCAATAATCATGTTTATGAAGATGCTGTACTTAAAATAAGAGAAGATGTTGCA
TCAGGTCAGCAGCTCCAATTTGCGATGCGTAGAACAGAAAAATTTCCTACTATGGCAATTCAAATGGTGGCTATTGGTGA
AGAATCTGGCGCATTAGATGACATGCTAGATAAAGTCGCAAACTATTATGAAAATGAAGTTGATCATGCTGTAGATGGTC
TAACATCAATGATGGAGCCTTTTATCATGGTGATTTTAGGCATTTTGATTGGAGGTTTAGTGGTTGCAATGTACTTACCA
ATTTTCCAAATGGGATCTGTACTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N9VY33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

77.206

100

0.772
  pilC Acinetobacter baylyi ADP1

75.735

100

0.757
  pilC Pseudomonas stutzeri DSM 10701

57.431

97.304

0.559
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria gonorrhoeae MS11

47.487

97.549

0.463
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

41.422

100

0.414
  pilC Vibrio campbellii strain DS40M4

42

98.039

0.412

Multiple sequence alignment