Detailed information NTG0156750

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: SanJ4206_RS01070
• Genome accession: NZ_CP012719
• Coordinates: 210817..211245 (+)
• Length: 142 a.a.
• NCBI ID: WP_037582611.1
• Uniprot ID: -
• Organism: Streptococcus anginosus strain J4206
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 205817..216245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SanJ4206_RS01040 (SanJ4206_0170)	-	206274..206633 (+)	360	WP_003028467.1	MerR family transcriptional regulator	-
SanJ4206_RS01045 (SanJ4206_0171)	glnA	206672..208018 (+)	1347	WP_022525292.1	type I glutamate--ammonia ligase	-
SanJ4206_RS01050 (SanJ4206_0172)	-	208203..208568 (+)	366	WP_022525291.1	DUF1033 family protein	-
SanJ4206_RS01055 (SanJ4206_0173)	comYA	208638..209579 (+)	942	WP_003028470.1	competence type IV pilus ATPase ComGA	Machinery gene
SanJ4206_RS01060 (SanJ4206_0174)	comYB	209521..210543 (+)	1023	WP_003028472.1	competence type IV pilus assembly protein ComGB	Machinery gene
SanJ4206_RS01065 (SanJ4206_0175)	comYC	210540..210857 (+)	318	WP_003028473.1	competence type IV pilus major pilin ComGC	Machinery gene
SanJ4206_RS01070 (SanJ4206_0176)	comYD	210817..211245 (+)	429	WP_037582611.1	competence type IV pilus minor pilin ComGD	Machinery gene
SanJ4206_RS01075 (SanJ4206_0177)	comGE/cglE	211217..211510 (+)	294	WP_003028475.1	competence type IV pilus minor pilin ComGE	Machinery gene
SanJ4206_RS01080 (SanJ4206_0178)	comGF/cglF	211494..211931 (+)	438	WP_003028476.1	competence type IV pilus minor pilin ComGF	Machinery gene
SanJ4206_RS01085	comGG	211912..212238 (+)	327	WP_003028477.1	competence type IV pilus minor pilin ComGG	-
SanJ4206_RS01090 (SanJ4206_0180)	comYH	212306..213259 (+)	954	WP_003028478.1	class I SAM-dependent methyltransferase	Machinery gene
SanJ4206_RS01095 (SanJ4206_0181)	-	213306..214505 (+)	1200	WP_003028479.1	acetate kinase	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 16336.89 Da
• Isoelectric Point: 10.4191

>NTDB_id=156750 SanJ4206_RS01070 WP_037582611.1 210817..211245(+) (comYD) [Streptococcus anginosus strain J4206]
MRNIQKKLVPLQIKGFTLLESLLTLFITSFLLLAVSGSVRSSFEQVEEQIFFLEFEHFYRESQKLSSSAQSQLDMNFSRE
RISNGYNRLAVPRSIQAPEDLTLHFDKAGGNSSLGKIVFQTKKQTVMYQLYLGNGKFKKTMR

Nucleotide

• Length: 429 bp

>NTDB_id=156750 SanJ4206_RS01070 WP_037582611.1 210817..211245(+) (comYD) [Streptococcus anginosus strain J4206]
ATGCGAAACATACAAAAGAAGCTCGTTCCGTTGCAGATTAAGGGATTTACGCTTTTGGAAAGTTTGCTGACTTTATTTAT
AACGAGTTTCTTATTGCTTGCTGTATCGGGCTCTGTTCGTTCTTCTTTTGAACAGGTGGAAGAGCAGATTTTCTTTCTGG
AGTTTGAGCATTTTTATCGGGAAAGTCAGAAGTTGAGCAGTTCAGCTCAAAGTCAATTGGACATGAATTTTTCTCGCGAG
AGGATTTCCAATGGTTACAACCGTTTGGCGGTTCCTCGTTCGATTCAAGCGCCAGAAGATTTGACGCTTCATTTTGATAA
GGCAGGTGGTAATTCATCGCTCGGAAAGATTGTCTTTCAGACAAAAAAGCAGACAGTTATGTATCAATTATATCTAGGAA
ATGGAAAATTTAAGAAAACAATGCGTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus gordonii str. Challis substr. CH1	63.433	94.366	0.599
comGD/cglD	Streptococcus mitis NCTC 12261	57.692	91.549	0.528
comGD/cglD	Streptococcus mitis SK321	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae Rx1	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae D39	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae R6	56.693	89.437	0.507
comGD/cglD	Streptococcus pneumoniae TIGR4	55.906	89.437	0.5
comYD	Streptococcus mutans UA140	53.077	91.549	0.486
comYD	Streptococcus mutans UA159	53.077	91.549	0.486