Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AOC04_RS00575 Genome accession   NZ_CP012676
Coordinates   117854..119071 (-) Length   405 a.a.
NCBI ID   WP_060690687.1    Uniprot ID   -
Organism   Pseudomonas versuta strain L10.10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 112854..124071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOC04_RS00540 (AOC04_00540) - 113913..114086 (-) 174 WP_060690681.1 DUF3094 family protein -
  AOC04_RS00545 (AOC04_00545) - 114142..114669 (-) 528 WP_060690682.1 MOSC domain-containing protein -
  AOC04_RS00550 (AOC04_00550) - 114666..115295 (-) 630 WP_060690683.1 DUF1780 domain-containing protein -
  AOC04_RS00555 (AOC04_00555) - 115421..116107 (+) 687 WP_060690684.1 energy-coupling factor ABC transporter permease -
  AOC04_RS00560 (AOC04_00560) yacG 116166..116369 (-) 204 WP_003443840.1 DNA gyrase inhibitor YacG -
  AOC04_RS00565 (AOC04_00565) coaE 116366..116989 (-) 624 WP_060690685.1 dephospho-CoA kinase -
  AOC04_RS00570 (AOC04_00570) pilD 117003..117851 (-) 849 WP_060690686.1 prepilin peptidase Machinery gene
  AOC04_RS00575 (AOC04_00575) pilC 117854..119071 (-) 1218 WP_060690687.1 type II secretion system F family protein Machinery gene
  AOC04_RS00580 (AOC04_00580) - 119282..119683 (+) 402 WP_060690688.1 pilin -
  AOC04_RS00585 (AOC04_00585) - 119844..121340 (+) 1497 WP_060690689.1 DNA-3-methyladenine glycosylase 2 -
  AOC04_RS00590 (AOC04_00590) - 121337..121834 (+) 498 WP_060690690.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AOC04_RS00595 (AOC04_00595) nadC 121963..122811 (-) 849 WP_060696831.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44125.95 Da        Isoelectric Point: 9.8937

>NTDB_id=156230 AOC04_RS00575 WP_060690687.1 117854..119071(-) (pilC) [Pseudomonas versuta strain L10.10]
MPVRALKTSVYRWHGTDRHGTRLSGETIAGNMAMIRVQLRRQGITVSKIRRHSDRAPCTGAAIKALQITLFTRQLATLTR
AGIPLLQALEVIANGFEHLAMRKLVRALQQDINAGISLASALRKNPAHFDALFCNLIEAGEQAGALEVLLDRVATYKEKT
ETLKKKIKKAMTYPITVLVVALAVCGILLIEVVPQFQNVFDSFDAQLPVFTLWVIAVSQAVQQFGLWLLAGGCLGVAGLR
YRYKHSPALRQRLDRWLLKLPVLGHLLHFSATARFARTLSTTVAAGVPLLEALNAVAGATGNYLFEQAVLQLQQQVATGS
QIHVAMGAVGVFPGMAIQMTAIGEESGTLDEMLNHVANYYENEVDTLVDNLTALMEPAIMVVLGVMVGGLVIAMYLPIFK
LGQVI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=156230 AOC04_RS00575 WP_060690687.1 117854..119071(-) (pilC) [Pseudomonas versuta strain L10.10]
ATGCCGGTACGGGCGCTTAAAACCAGTGTTTATCGATGGCACGGCACTGATCGTCACGGGACTCGACTCAGTGGTGAAAC
CATCGCAGGCAACATGGCCATGATCCGGGTTCAGCTACGTCGACAAGGTATTACCGTTAGTAAAATCCGCCGACATTCAG
ACCGCGCGCCCTGCACTGGCGCAGCAATCAAAGCCCTGCAAATCACCCTTTTCACCCGCCAGCTGGCCACGCTAACCAGA
GCCGGCATCCCGCTGCTGCAAGCCCTGGAGGTCATTGCCAACGGCTTCGAACATCTCGCCATGCGCAAATTGGTGAGGGC
GCTGCAACAGGACATCAATGCAGGGATCAGCCTGGCCAGTGCGCTGCGAAAAAACCCGGCACATTTCGATGCGCTGTTTT
GCAATCTCATAGAAGCAGGCGAACAGGCTGGAGCCCTGGAGGTGTTGCTCGACAGGGTCGCGACTTACAAGGAAAAAACC
GAGACCCTGAAAAAGAAAATCAAAAAGGCCATGACGTACCCCATCACCGTGCTGGTGGTGGCATTAGCGGTTTGCGGGAT
TTTGTTGATTGAAGTGGTGCCGCAATTCCAGAACGTATTCGATTCATTTGACGCCCAACTGCCGGTTTTCACTTTATGGG
TGATCGCCGTCTCGCAGGCGGTGCAACAGTTCGGGCTGTGGCTGCTTGCCGGTGGATGCCTAGGGGTTGCGGGGTTGCGC
TATCGCTACAAACACTCCCCGGCACTGCGCCAGCGGCTTGATCGGTGGTTATTAAAACTGCCGGTGCTGGGCCACCTGCT
GCATTTTTCGGCCACTGCCCGTTTTGCCCGCACCCTGTCCACCACCGTTGCCGCCGGAGTCCCATTGCTTGAAGCGCTGA
ATGCAGTCGCCGGGGCCACGGGCAACTACCTGTTCGAGCAAGCGGTGCTGCAACTCCAGCAGCAGGTCGCAACAGGCAGT
CAGATCCATGTCGCCATGGGCGCTGTGGGCGTGTTTCCGGGCATGGCGATTCAGATGACAGCAATTGGAGAAGAATCCGG
CACATTGGACGAGATGCTCAACCACGTAGCCAACTATTATGAGAACGAAGTCGACACCCTGGTCGATAACCTGACAGCAT
TGATGGAGCCCGCAATCATGGTGGTACTCGGTGTCATGGTGGGCGGGCTGGTAATTGCCATGTATTTACCGATTTTCAAA
TTGGGCCAAGTGATTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.062

100

0.551
  pilC Acinetobacter baylyi ADP1

52.764

98.272

0.519
  pilC Acinetobacter baumannii D1279779

51.889

98.025

0.509
  pilC Legionella pneumophila strain ERS1305867

48.25

98.765

0.477
  pilC Vibrio cholerae strain A1552

40.806

98.025

0.4
  pilC Vibrio campbellii strain DS40M4

39.043

98.025

0.383
  pilG Neisseria gonorrhoeae MS11

38.025

100

0.38
  pilG Neisseria meningitidis 44/76-A

39.433

95.802

0.378
  pilC Thermus thermophilus HB27

37.157

99.012

0.368

Multiple sequence alignment