Detailed information NTG0156229

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AOC04_RS00570
• Genome accession: NZ_CP012676
• Coordinates: 117003..117851 (-)
• Length: 282 a.a.
• NCBI ID: WP_060690686.1
• Uniprot ID: -
• Organism: Pseudomonas versuta strain L10.10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 112003..122851

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AOC04_RS00535 (AOC04_00535)	-	112548..113849 (-)	1302	WP_060690680.1	NAD(P)/FAD-dependent oxidoreductase	-
AOC04_RS00540 (AOC04_00540)	-	113913..114086 (-)	174	WP_060690681.1	DUF3094 family protein	-
AOC04_RS00545 (AOC04_00545)	-	114142..114669 (-)	528	WP_060690682.1	MOSC domain-containing protein	-
AOC04_RS00550 (AOC04_00550)	-	114666..115295 (-)	630	WP_060690683.1	DUF1780 domain-containing protein	-
AOC04_RS00555 (AOC04_00555)	-	115421..116107 (+)	687	WP_060690684.1	energy-coupling factor ABC transporter permease	-
AOC04_RS00560 (AOC04_00560)	yacG	116166..116369 (-)	204	WP_003443840.1	DNA gyrase inhibitor YacG	-
AOC04_RS00565 (AOC04_00565)	coaE	116366..116989 (-)	624	WP_060690685.1	dephospho-CoA kinase	-
AOC04_RS00570 (AOC04_00570)	pilD	117003..117851 (-)	849	WP_060690686.1	prepilin peptidase	Machinery gene
AOC04_RS00575 (AOC04_00575)	pilC	117854..119071 (-)	1218	WP_060690687.1	type II secretion system F family protein	Machinery gene
AOC04_RS00580 (AOC04_00580)	-	119282..119683 (+)	402	WP_060690688.1	pilin	-
AOC04_RS00585 (AOC04_00585)	-	119844..121340 (+)	1497	WP_060690689.1	DNA-3-methyladenine glycosylase 2	-
AOC04_RS00590 (AOC04_00590)	-	121337..121834 (+)	498	WP_060690690.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
AOC04_RS00595 (AOC04_00595)	nadC	121963..122811 (-)	849	WP_060696831.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 282 a.a.
• Molecular weight: 31468.76 Da
• Isoelectric Point: 7.8537

>NTDB_id=156229 AOC04_RS00570 WP_060690686.1 117003..117851(-) (pilD) [Pseudomonas versuta strain L10.10]
MIEFFTRHPDAFIVCALILGLLTGSFINVLVWRLPRMLEQDWRAQAKELLEMPPAEKMPVYNLMLPRSHCPECQHPLRLW
ENIPLLSYLLLRGKCSQCRTLISPRYPLTELACGLLSGFIAWHFGFTLQAGWMLVLTWGLLAICLIDAEHLIVPDVLVLP
LLWTGLLLNSFDTFTGLSQAVWGAALGYASLWSIFWIFKLLTGKDGMGYGDFKLLAMFGAWGGIAVLPMTIVLSSLMGAI
VGLILLAVRRAKPCTAIPFAPYLAIGGWIGLLWGGQISAFYW

Nucleotide

• Length: 849 bp

>NTDB_id=156229 AOC04_RS00570 WP_060690686.1 117003..117851(-) (pilD) [Pseudomonas versuta strain L10.10]
ATGATTGAGTTTTTTACCCGCCATCCAGACGCTTTTATCGTCTGTGCCCTGATCCTCGGCTTGTTGACGGGCAGCTTTAT
CAATGTACTGGTATGGCGCTTGCCCAGAATGCTTGAACAGGACTGGCGAGCACAGGCCAAGGAATTGCTGGAGATGCCCC
CAGCCGAAAAAATGCCTGTGTATAACTTGATGCTGCCCCGCTCCCATTGCCCGGAATGCCAGCATCCCTTACGCCTGTGG
GAAAACATACCGCTGCTCAGCTACCTGTTGCTGCGTGGCAAGTGCTCGCAGTGCCGTACCCTCATCAGCCCGCGCTACCC
TTTGACCGAACTGGCTTGCGGATTGCTGTCAGGGTTTATTGCCTGGCATTTCGGTTTTACCCTCCAGGCGGGCTGGATGC
TCGTACTGACATGGGGGCTGCTGGCTATTTGCCTGATCGATGCTGAACATCTGATCGTGCCCGATGTGCTGGTACTGCCC
CTGCTCTGGACGGGACTGCTGCTCAATAGTTTCGATACGTTTACCGGTCTGTCACAAGCGGTATGGGGCGCGGCGCTGGG
TTATGCCAGCCTGTGGTCAATCTTCTGGATCTTCAAACTGCTCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TATTGGCCATGTTCGGGGCCTGGGGCGGGATTGCCGTTCTCCCCATGACCATTGTGCTCTCGTCACTGATGGGGGCGATC
GTCGGCCTGATCCTGCTGGCTGTGCGCCGTGCCAAACCCTGTACTGCAATTCCCTTTGCACCCTATCTGGCAATTGGCGG
CTGGATCGGATTGCTCTGGGGTGGTCAAATAAGCGCCTTCTATTGGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.65	100	0.504
pilD	Vibrio campbellii strain DS40M4	46.853	100	0.475
pilD	Acinetobacter nosocomialis M2	44.876	100	0.45
pilD	Acinetobacter baumannii D1279779	44.326	100	0.443
pilD	Neisseria gonorrhoeae MS11	47.059	90.426	0.426