Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   RN86_RS03555 Genome accession   NZ_CP012648
Coordinates   724940..726196 (+) Length   418 a.a.
NCBI ID   WP_053794302.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 719940..731196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS03520 (RN86_03515) - 720653..721174 (-) 522 WP_046164534.1 RDD family protein -
  RN86_RS03525 (RN86_03520) - 721158..721661 (-) 504 WP_053794887.1 helix-turn-helix transcriptional regulator -
  RN86_RS03530 (RN86_03525) ruvA 721829..722419 (+) 591 WP_053794300.1 Holliday junction branch migration protein RuvA -
  RN86_RS03535 (RN86_03530) - 722416..722988 (+) 573 WP_231108794.1 hypothetical protein -
  RN86_RS03540 (RN86_03535) - 722992..723546 (+) 555 WP_053794301.1 DNA-3-methyladenine glycosylase I -
  RN86_RS03545 (RN86_03540) - 723551..724210 (+) 660 WP_046164529.1 type II CAAX endopeptidase family protein -
  RN86_RS03550 (RN86_03545) - 724260..724670 (-) 411 WP_046164528.1 helix-turn-helix transcriptional regulator -
  RN86_RS03555 (RN86_03550) cinA 724940..726196 (+) 1257 WP_053794302.1 competence/damage-inducible protein A Machinery gene
  RN86_RS03560 (RN86_03555) recA 726255..727406 (+) 1152 WP_046164526.1 recombinase RecA Machinery gene
  RN86_RS03565 (RN86_03560) spx 727493..727891 (+) 399 WP_046164525.1 transcriptional regulator Spx -
  RN86_RS03570 (RN86_03565) - 728037..728609 (+) 573 WP_045773038.1 SP0191 family lipoprotein -
  RN86_RS03575 (RN86_03570) - 728721..728987 (+) 267 WP_008809968.1 IreB family regulatory phosphoprotein -
  RN86_RS03580 (RN86_03575) ruvX 728987..729406 (+) 420 WP_008809967.1 Holliday junction resolvase RuvX -
  RN86_RS03585 (RN86_03580) - 729427..729738 (+) 312 WP_008809966.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44823.05 Da        Isoelectric Point: 4.7725

>NTDB_id=156064 RN86_RS03555 WP_053794302.1 724940..726196(+) (cinA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYFQTAVGDNENRLLSILEIAKGRSNLIILTGGLGPTEDDLTKQT
LAKFLGRELIFDPQAVEKLDHFFASRPDYARTPNNERQAQLVEGSTPLPNATGLAVGGLLEADGVTYVVLPGPPSELKPM
VNNELVPLLSTGQKLYSRVLRFFGIGESQLVTILSEMIEKQNDPTIAPYAKTGEVTLRLSTKALSQAEADTKFEAVEKEI
LGHKTFEEQSLSEIFYGYGDDNSLAQVAFDLLKSQEKTISAAESLTAGLFQATLADFAGASAIFSGGFVTYSMEEKSRML
DIPLGDLEKHGVVSAFTAGKMAEQARKLTESDLAVSLTGVAGPDSLEGHPAGTVFIGLASAAGTETIKVNIAGRSRRDVR
KIAVLHAFNLVRKTLLNS

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=156064 RN86_RS03555 WP_053794302.1 724940..726196(+) (cinA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAAGCAGAAATTATTGCTGTGGGCACCGAGATTCTGACAGGTCAGATTGTCAATACCAATGCCCAATTTTTATCTGA
GAAACTGGCTAGTCTGGGGATTGATGTCTATTTTCAGACAGCTGTAGGGGACAATGAAAATCGTCTCCTCTCTATCCTAG
AGATTGCAAAAGGACGTAGTAATCTGATTATTCTGACAGGAGGCTTGGGGCCAACAGAGGATGATTTGACCAAGCAGACC
TTGGCTAAGTTTTTGGGACGTGAGCTCATCTTTGATCCTCAGGCTGTGGAAAAGTTGGATCATTTTTTTGCTAGCCGACC
AGATTATGCCCGAACACCCAACAATGAGCGTCAGGCCCAGTTGGTTGAAGGCTCAACTCCTTTACCAAATGCGACCGGCT
TAGCTGTCGGAGGCTTGTTAGAAGCAGACGGAGTGACCTATGTAGTCTTGCCTGGCCCGCCTAGCGAGCTTAAACCTATG
GTCAATAATGAGCTGGTTCCCCTCTTATCCACAGGTCAGAAATTGTACTCACGGGTGCTGCGTTTCTTTGGTATCGGTGA
GAGTCAGCTAGTGACTATTTTGTCAGAGATGATTGAGAAACAGAACGACCCCACAATTGCTCCTTATGCAAAGACAGGGG
AAGTTACCCTGCGACTGTCCACCAAGGCCTTGAGTCAGGCAGAAGCTGACACCAAGTTCGAGGCTGTGGAAAAGGAAATT
TTGGGACATAAGACTTTTGAGGAACAGTCTCTATCAGAGATTTTCTATGGCTACGGGGATGACAATTCCTTGGCACAGGT
GGCTTTCGACTTGCTCAAGAGCCAAGAGAAGACAATTTCAGCAGCAGAGAGCCTGACAGCAGGTCTCTTTCAAGCGACTT
TGGCAGATTTTGCTGGAGCTTCAGCTATTTTTTCAGGCGGCTTCGTCACCTATAGCATGGAGGAAAAGAGCCGGATGCTG
GATATCCCGTTGGGAGACCTTGAGAAGCATGGAGTTGTTTCCGCTTTTACGGCTGGGAAAATGGCAGAGCAGGCTAGAAA
GCTGACCGAAAGCGACTTAGCTGTTAGTCTGACAGGCGTGGCTGGACCAGATTCACTGGAAGGCCATCCAGCAGGGACCG
TTTTTATCGGTTTAGCTAGTGCTGCAGGAACGGAAACTATTAAGGTCAATATTGCTGGACGTAGCCGGCGAGATGTACGA
AAAATCGCTGTCCTGCACGCCTTTAACCTAGTGCGAAAGACTTTATTAAATAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(262-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

78.177

99.761

0.78
  cinA Streptococcus mitis NCTC 12261

77.698

99.761

0.775
  cinA Streptococcus pneumoniae TIGR4

76.739

99.761

0.766
  cinA Streptococcus pneumoniae Rx1

76.739

99.761

0.766
  cinA Streptococcus pneumoniae R6

76.739

99.761

0.766
  cinA Streptococcus pneumoniae D39

76.499

99.761

0.763
  cinA Streptococcus mutans UA159

75.359

100

0.754
  cinA Streptococcus suis isolate S10

54.808

99.522

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

46.411

100

0.464

Multiple sequence alignment