Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RN80_RS04505 Genome accession   NZ_CP012646
Coordinates   920045..920515 (+) Length   156 a.a.
NCBI ID   WP_000609606.1    Uniprot ID   A0A0U0CT68
Organism   Streptococcus mitis strain KCOM 1350 (= ChDC B183)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 915045..925515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN80_RS04500 (RN80_04525) rpsF 919743..920033 (+) 291 WP_001151778.1 30S ribosomal protein S6 -
  RN80_RS04505 (RN80_04530) ssbA 920045..920515 (+) 471 WP_000609606.1 single-stranded DNA-binding protein SsbA Machinery gene
  RN80_RS04510 (RN80_04535) rpsR 920547..920786 (+) 240 WP_000068664.1 30S ribosomal protein S18 -
  RN80_RS04515 (RN80_04540) - 921058..921561 (+) 504 WP_045612060.1 GNAT family N-acetyltransferase -
  RN80_RS04520 (RN80_04545) - 921641..923041 (+) 1401 WP_060627797.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  RN80_RS04525 (RN80_04550) - 923043..923405 (+) 363 WP_000689605.1 S1 RNA-binding domain-containing protein -
  RN80_RS04530 (RN80_04555) - 923458..924207 (+) 750 WP_000390769.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  RN80_RS04535 (RN80_04560) - 924197..924484 (+) 288 WP_060627799.1 GIY-YIG nuclease family protein -
  RN80_RS04540 (RN80_04565) - 924567..925502 (+) 936 WP_060627801.1 manganese-dependent inorganic pyrophosphatase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17352.20 Da        Isoelectric Point: 4.9164

>NTDB_id=156017 RN80_RS04505 WP_000609606.1 920045..920515(+) (ssbA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=156017 RN80_RS04505 WP_000609606.1 920045..920515(+) (ssbA) [Streptococcus mitis strain KCOM 1350 (= ChDC B183)]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGACGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAGAACCTTGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAAGGTCACACAGGTGGAGCTTATTCTGCACCAACTGCAAACTATTCAGCGCCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U0CT68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.609
  ssb Latilactobacillus sakei subsp. sakei 23K

53.409

100

0.603
  ssbB/cilA Streptococcus pneumoniae TIGR4

51.282

75

0.385
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.949

0.378
  ssbB/cilA Streptococcus pneumoniae R6

50.427

75

0.378
  ssbB/cilA Streptococcus mitis SK321

50.427

75

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae Rx1

50.427

75

0.378
  ssbB/cilA Streptococcus pneumoniae D39

50.427

75

0.378
  ssbB Streptococcus sobrinus strain NIDR 6715-7

54.128

69.872

0.378

Multiple sequence alignment