Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AM586_RS20080 Genome accession   NZ_CP012640
Coordinates   4487960..4489195 (-) Length   411 a.a.
NCBI ID   WP_052233450.1    Uniprot ID   A0A0L6VYG8
Organism   Massilia sp. WG5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4482960..4494195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM586_RS20055 (AM586_05895) coaE 4483370..4484029 (-) 660 WP_052233454.1 dephospho-CoA kinase -
  AM586_RS20060 (AM586_05900) - 4484030..4484902 (-) 873 WP_052233453.1 A24 family peptidase -
  AM586_RS28920 - 4484971..4485360 (-) 390 WP_307719643.1 SGNH hydrolase domain-containing protein -
  AM586_RS20065 (AM586_05905) - 4485393..4485695 (+) 303 WP_052233452.1 putative quinol monooxygenase -
  AM586_RS20070 (AM586_05910) - 4485846..4486850 (-) 1005 WP_052233451.1 NAD-dependent epimerase/dehydratase family protein -
  AM586_RS20075 (AM586_05915) - 4486985..4487935 (+) 951 WP_082439415.1 LysR family transcriptional regulator -
  AM586_RS20080 (AM586_05920) pilC 4487960..4489195 (-) 1236 WP_052233450.1 type II secretion system F family protein Machinery gene
  AM586_RS20085 (AM586_05925) pilB 4489230..4490963 (-) 1734 WP_052233449.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AM586_RS20090 (AM586_05930) - 4491185..4492483 (-) 1299 WP_052233448.1 HlyC/CorC family transporter -
  AM586_RS20095 (AM586_05935) - 4492549..4493106 (-) 558 WP_052233447.1 ClpP family protease -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45025.27 Da        Isoelectric Point: 9.9565

>NTDB_id=155949 AM586_RS20080 WP_052233450.1 4487960..4489195(-) (pilC) [Massilia sp. WG5]
MATSAQVRTAGGAQIKEHVYAWEGKDKTGKTVRGEMRAGGETIVNVTLRRQGIVVIKVKKKAYRSGKKIVDKDLTLFTRQ
LATMMKAGVPLLQSFDIVGKGHANPSMSKLIMDLRADIETGTSLNNAFRKYPLYFDPLFCNLVGAGEQAGILEDLLTRLA
IYKEKTLALKAKIKSALMYPISILAIAFIVTAVIMIWVVPAFKEVFSSFGADLPTPTLVVMAMSDFVVKWWYIIFGTLFG
AIYFFFQSWRRSLKMQQAMDRLLLRLPVFGEVIRKATIARWTRTLATMFAAGVPLVEALDSVGGASGNAVYLEATRKIQN
EVSTGTSLTVAMQNVNVFPNMVTQMVSIGEESGALDGMLGKVADFYEEEVDEAVSALSSLMEPMIMVILGVLIGGLVVAM
YLPIFKLGAVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=155949 AM586_RS20080 WP_052233450.1 4487960..4489195(-) (pilC) [Massilia sp. WG5]
ATGGCAACTTCGGCCCAAGTACGCACCGCTGGCGGCGCCCAGATCAAGGAGCACGTCTACGCCTGGGAAGGCAAGGACAA
GACCGGCAAGACCGTGCGCGGCGAAATGCGCGCCGGCGGCGAGACCATCGTCAACGTGACCCTGCGCCGCCAGGGCATCG
TGGTCATCAAGGTCAAGAAGAAGGCTTACCGCAGCGGCAAGAAAATCGTCGACAAGGACCTGACCCTGTTCACGCGCCAG
CTCGCCACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGTCCTTCGACATCGTCGGCAAGGGCCACGCCAACCCCTCGAT
GTCCAAGCTGATCATGGACTTGCGCGCCGACATCGAGACCGGCACCAGCCTGAACAACGCCTTCCGCAAGTATCCGCTGT
ACTTCGACCCGCTGTTCTGCAACCTGGTCGGCGCCGGCGAACAGGCCGGCATCCTGGAAGACCTGCTGACCCGCCTGGCG
ATCTACAAGGAAAAGACGCTGGCCCTGAAGGCCAAGATCAAGTCGGCCCTGATGTACCCGATCTCGATCCTGGCGATCGC
CTTCATCGTCACCGCCGTGATCATGATCTGGGTGGTGCCGGCCTTCAAGGAAGTGTTCAGTAGCTTCGGCGCCGACCTGC
CGACCCCCACCCTGGTGGTGATGGCGATGTCCGACTTCGTGGTGAAGTGGTGGTACATCATCTTCGGCACGCTGTTCGGC
GCGATCTACTTCTTCTTCCAGTCCTGGCGCCGCTCGCTGAAGATGCAGCAGGCGATGGACCGGCTGCTGCTGCGCCTGCC
TGTCTTCGGCGAGGTGATCCGCAAGGCCACGATCGCGCGCTGGACCCGCACCCTCGCGACCATGTTCGCGGCCGGCGTGC
CGCTGGTCGAAGCCCTCGACTCGGTCGGCGGCGCCTCCGGCAACGCGGTGTACCTGGAAGCGACCCGCAAGATCCAGAAC
GAGGTCAGCACCGGCACCAGCCTGACGGTGGCGATGCAGAACGTCAATGTCTTCCCGAACATGGTGACCCAGATGGTCTC
GATCGGCGAAGAATCCGGCGCCCTCGACGGCATGCTGGGCAAGGTCGCCGACTTCTACGAAGAGGAAGTCGACGAGGCCG
TCAGCGCGCTGTCCTCGCTGATGGAACCGATGATCATGGTGATCCTGGGCGTGCTGATCGGCGGCCTGGTGGTGGCGATG
TACCTGCCGATCTTCAAGCTGGGGGCGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L6VYG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.5

97.324

0.53
  pilC Legionella pneumophila strain ERS1305867

54.545

96.35

0.526
  pilG Neisseria gonorrhoeae MS11

52.645

96.594

0.509
  pilG Neisseria meningitidis 44/76-A

52.141

96.594

0.504
  pilC Acinetobacter baylyi ADP1

51.759

96.837

0.501
  pilC Acinetobacter baumannii D1279779

51.134

96.594

0.494
  pilC Vibrio cholerae strain A1552

40.152

96.35

0.387
  pilC Vibrio campbellii strain DS40M4

39.394

96.35

0.38
  pilC Thermus thermophilus HB27

37.019

100

0.375

Multiple sequence alignment