Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AK825_RS00360 Genome accession   NZ_CP012533
Coordinates   79934..81157 (-) Length   407 a.a.
NCBI ID   WP_068033674.1    Uniprot ID   A0A7U4QN30
Organism   Psychrobacter sp. P11G5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 74934..86157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK825_RS00340 (AK825_00340) - 76854..77189 (+) 336 WP_068033666.1 pyrimidine/purine nucleoside phosphorylase -
  AK825_RS00345 (AK825_00345) rlmB 77399..78169 (+) 771 WP_068033668.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AK825_RS00350 (AK825_00350) coaE 78132..78815 (-) 684 WP_068033670.1 dephospho-CoA kinase -
  AK825_RS00355 (AK825_00355) pilD 79027..79926 (-) 900 WP_068033673.1 A24 family peptidase Machinery gene
  AK825_RS00360 (AK825_00360) pilC 79934..81157 (-) 1224 WP_068033674.1 type II secretion system F family protein Machinery gene
  AK825_RS00365 (AK825_00365) pilB 81270..82979 (-) 1710 WP_068033676.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AK825_RS00370 (AK825_00370) tpiA 83424..84251 (+) 828 WP_068033678.1 triose-phosphate isomerase -
  AK825_RS00375 (AK825_00375) secG 84478..84786 (+) 309 WP_068033680.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44546.53 Da        Isoelectric Point: 9.8100

>NTDB_id=155006 AK825_RS00360 WP_068033674.1 79934..81157(-) (pilC) [Psychrobacter sp. P11G5]
MAQAKTDMLLDFVYDGVNRRGQKIKGETTGRSLEIAKATLRKQGITVKTIKKKPKPLFKMKKAIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVIVVALIVTIILLIKVVPVFSGLFESFGAELPAFTQMVVAMSDWMQTWWFILIIVIGGSIAGF
SEAKKRSKKFRDFLDRAALKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSMRTTNLFPSLAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=155006 AK825_RS00360 WP_068033674.1 79934..81157(-) (pilC) [Psychrobacter sp. P11G5]
ATGGCACAAGCTAAGACTGATATGCTACTAGACTTTGTCTATGACGGGGTCAATCGGCGTGGACAAAAAATCAAGGGTGA
GACCACAGGTCGCAGTTTAGAGATTGCAAAAGCGACTTTGCGTAAACAAGGTATTACAGTTAAAACTATTAAGAAAAAAC
CCAAACCTTTATTTAAAATGAAGAAAGCCATTAAGCCTATTGATATCGCTATTTTTGCCCGTCAGTTGGCCACTATGATG
AAAGCTGGGGTGCCCTTGACCCAATCATTTGAGATTGTCGCTGATTCGCTAGATAACCCAAGTATGAAAGACTTGGTATT
GCAAATCAAAGCTGATATTGAAGCTGGTGGTACTTTTGCCTCTGCGCTACGTAGGCATCCACGCTATTTTGACGATTTGT
TCTGTTCTCTTGTCGATTCTGGTGAGCAATCAGGTGCACTTGAAACTATGCTTGAACGTGTCGCTACCTATAAAGAAAAA
AGCGAGCTACTCAAAGCCAAAATCAAAAAAGCTATGAAATATCCTATTGCGGTAATCGTCGTTGCCTTGATCGTCACAAT
CATATTGCTTATTAAAGTTGTTCCTGTATTCTCTGGTTTATTCGAATCTTTTGGCGCAGAATTACCTGCTTTTACCCAGA
TGGTTGTCGCCATGTCGGACTGGATGCAAACGTGGTGGTTTATTCTTATTATCGTAATTGGTGGTTCTATCGCTGGCTTT
TCTGAAGCCAAGAAACGATCTAAGAAATTTCGTGACTTTCTCGACCGTGCTGCTCTAAAAGCGCCAATATTTGGCAATAT
TGCTTATCAAGCTGTTATCGCACGCTTCGCTCGCACACTATCAACGACCTTCGCCGCTGGTGTACCTCTAATTGATGCTT
TAGACTCTACTGCTGGTGCCGCTAACAATGTGGTATTTTACAATGCCATTCAACAAATCAAGAATGATGTATCAACTGGT
CAACAGTTACAGTTTTCAATGCGTACGACTAATCTGTTCCCAAGCTTAGCGATCCAAATGGTCGGTATTGGTGAGGAATC
AGGTAGCTTGGAAGAGATGCTCGATAAGGTAGCCGTATATTATGAAAACGAAGTTGATAATGCAGTTGATGGCTTGACCA
GCTTAATGGAGCCATTAATTATGGCAGTATTAGGTGTGTTAGTAGGTGGCTTGGTCATTGCCATGTACTTACCAATCTTC
CAAATGGGCTCAGTAGTAGGGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U4QN30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.343

100

0.705
  pilC Acinetobacter baylyi ADP1

69.118

100

0.693
  pilC Pseudomonas stutzeri DSM 10701

64.304

97.052

0.624
  pilC Legionella pneumophila strain ERS1305867

56.892

98.034

0.558
  pilC Vibrio cholerae strain A1552

43.382

100

0.435
  pilG Neisseria gonorrhoeae MS11

43.687

97.297

0.425
  pilG Neisseria meningitidis 44/76-A

43.434

97.297

0.423
  pilC Vibrio campbellii strain DS40M4

42.145

98.526

0.415

Multiple sequence alignment