Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AK825_RS00355 Genome accession   NZ_CP012533
Coordinates   79027..79926 (-) Length   299 a.a.
NCBI ID   WP_068033673.1    Uniprot ID   -
Organism   Psychrobacter sp. P11G5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 74027..84926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK825_RS00335 (AK825_00335) recN 74527..76206 (-) 1680 WP_068033664.1 DNA repair protein RecN -
  AK825_RS00340 (AK825_00340) - 76854..77189 (+) 336 WP_068033666.1 pyrimidine/purine nucleoside phosphorylase -
  AK825_RS00345 (AK825_00345) rlmB 77399..78169 (+) 771 WP_068033668.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AK825_RS00350 (AK825_00350) coaE 78132..78815 (-) 684 WP_068033670.1 dephospho-CoA kinase -
  AK825_RS00355 (AK825_00355) pilD 79027..79926 (-) 900 WP_068033673.1 A24 family peptidase Machinery gene
  AK825_RS00360 (AK825_00360) pilC 79934..81157 (-) 1224 WP_068033674.1 type II secretion system F family protein Machinery gene
  AK825_RS00365 (AK825_00365) pilB 81270..82979 (-) 1710 WP_068033676.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AK825_RS00370 (AK825_00370) tpiA 83424..84251 (+) 828 WP_068033678.1 triose-phosphate isomerase -
  AK825_RS00375 (AK825_00375) secG 84478..84786 (+) 309 WP_068033680.1 preprotein translocase subunit SecG -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 33032.60 Da        Isoelectric Point: 8.6999

>NTDB_id=155005 AK825_RS00355 WP_068033673.1 79027..79926(-) (pilD) [Psychrobacter sp. P11G5]
MQLIELLQSNMTLALIVFAILGLCVGSFLNVVIHRIPLMMVYSWRQECSQFMSQQIDMPHKHTKALMDVTAKDTPITLSR
PASRCPHCAHKIKWYENIPLISWLVLRGRCSACDAAIGARYPIVELVTALLSALVIYQFGVTATGLSALVLVWTLIALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQSWFVSPTQSIWGLLLGFLSLWIVVKVFYLITKKHGMGQGDFKLLAVLGAWLGPM
MLPLIILLSSLLGSIVGIILMKRHGESQPFAFGPYIAVAGIVALLYGSDIVNWYLNMYV

Nucleotide


Download         Length: 900 bp        

>NTDB_id=155005 AK825_RS00355 WP_068033673.1 79027..79926(-) (pilD) [Psychrobacter sp. P11G5]
ATGCAATTGATAGAATTATTACAAAGTAATATGACCTTGGCGCTAATAGTATTTGCGATATTAGGCCTTTGTGTAGGTAG
TTTTTTGAATGTAGTGATTCATCGTATACCGCTAATGATGGTTTACAGCTGGCGACAAGAATGTAGCCAGTTTATGTCTC
AGCAAATAGATATGCCGCATAAGCATACTAAAGCTCTGATGGACGTTACTGCAAAGGATACGCCTATCACTTTGAGTAGA
CCAGCGTCACGTTGCCCTCACTGCGCGCACAAAATTAAATGGTATGAAAATATACCGTTAATAAGCTGGCTAGTACTACG
TGGACGCTGCTCTGCTTGTGACGCTGCAATCGGTGCACGTTATCCTATTGTGGAGCTTGTCACTGCACTATTATCAGCAT
TGGTTATCTACCAATTCGGTGTTACTGCTACTGGGTTGTCTGCTCTTGTACTGGTATGGACGCTTATTGCCTTAACAGGA
ATCGATTTTGATACTCAGCTATTACCTGATCGGCTGACTTTCCCATTAGCAGGGCTTGGTTTAGCGGTTAATTCTCAAAG
CTGGTTTGTCTCCCCTACCCAATCGATTTGGGGATTATTGCTCGGGTTCTTATCATTATGGATAGTGGTCAAGGTGTTCT
ATCTTATAACCAAAAAACACGGTATGGGGCAAGGTGATTTCAAACTATTAGCCGTACTAGGTGCTTGGCTTGGACCGATG
ATGTTACCGTTAATCATCCTCCTGTCGTCTTTACTTGGCTCAATCGTCGGTATTATCTTGATGAAAAGACATGGTGAGAG
CCAACCCTTCGCTTTTGGACCTTATATCGCTGTCGCTGGAATAGTTGCATTACTCTATGGCTCCGACATCGTTAATTGGT
ACTTGAATATGTACGTTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-139)

Type IV leader peptidase family (Peptidase_A24)

(149-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

55.068

98.997

0.545
  pilD Acinetobacter baumannii D1279779

54.576

98.662

0.538
  pilD Vibrio campbellii strain DS40M4

45.791

99.331

0.455
  pilD Vibrio cholerae strain A1552

46.479

94.983

0.441
  pilD Neisseria gonorrhoeae MS11

42.349

93.98

0.398

Multiple sequence alignment