Detailed information
Bioinformatically predicted
Overview
| Name | comE1/comEA | Type | Machinery gene |
| Locus tag | AMS64_RS19590 | Genome accession | NZ_CP012504 |
| Coordinates | 4276576..4276896 (+) | Length | 106 a.a. |
| NCBI ID | WP_064337275.1 | Uniprot ID | - |
| Organism | Aeromonas veronii strain TH0426 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4271576..4281896
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMS64_RS19575 (AMS64_19565) | yfbV | 4272016..4272456 (-) | 441 | WP_005339116.1 | terminus macrodomain insulation protein YfbV | - |
| AMS64_RS19580 (AMS64_19570) | - | 4272761..4273963 (+) | 1203 | WP_005349210.1 | acetate kinase | - |
| AMS64_RS19585 (AMS64_19575) | pta | 4274018..4276198 (+) | 2181 | WP_064337274.1 | phosphate acetyltransferase | - |
| AMS64_RS19590 (AMS64_19580) | comE1/comEA | 4276576..4276896 (+) | 321 | WP_064337275.1 | ComEA family DNA-binding protein | Machinery gene |
| AMS64_RS19595 (AMS64_19585) | galU | 4276993..4277904 (+) | 912 | WP_005339121.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| AMS64_RS19600 (AMS64_19590) | - | 4278117..4279514 (+) | 1398 | WP_064337276.1 | peptide MFS transporter | - |
| AMS64_RS19605 (AMS64_19595) | - | 4279588..4280559 (-) | 972 | WP_064337277.1 | response regulator | - |
| AMS64_RS19610 (AMS64_19600) | - | 4280800..4281498 (+) | 699 | WP_064337278.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11230.21 Da Isoelectric Point: 9.9853
>NTDB_id=154841 AMS64_RS19590 WP_064337275.1 4276576..4276896(+) (comE1/comEA) [Aeromonas veronii strain TH0426]
MLMKKLSAIMLLACLPLFSQPALAADKAAPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
MLMKKLSAIMLLACLPLFSQPALAADKAAPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=154841 AMS64_RS19590 WP_064337275.1 4276576..4276896(+) (comE1/comEA) [Aeromonas veronii strain TH0426]
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCTCTGTTCAGCCAACCCGCGTTGGCCGCAGATAA
GGCAGCGCCCAAGCAAACAACCACAACCGCGGTTGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
ATGCTGATGAAGAAGCTCTCTGCAATCATGCTGTTAGCCTGCTTGCCTCTGTTCAGCCAACCCGCGTTGGCCGCAGATAA
GGCAGCGCCCAAGCAAACAACCACAACCGCGGTTGCCAAGGAGTCCGGCAAGCTGAATATCAATACGGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGCGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCAGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE1/comEA | Haemophilus influenzae Rd KW20 |
50 |
100 |
0.528 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
46.018 |
100 |
0.491 |
| comEA | Vibrio cholerae strain A1552 |
48.113 |
100 |
0.481 |
| comEA | Vibrio cholerae C6706 |
48.113 |
100 |
0.481 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.33 |
91.509 |
0.406 |
| comEA | Legionella pneumophila str. Paris |
40.404 |
93.396 |
0.377 |
| comEA | Legionella pneumophila strain ERS1305867 |
40.404 |
93.396 |
0.377 |
| comEA/celA/cilE | Streptococcus mitis NCTC 12261 |
42.553 |
88.679 |
0.377 |
| comEA | Acinetobacter baylyi ADP1 |
51.316 |
71.698 |
0.368 |
| comEA | Vibrio campbellii strain DS40M4 |
37.143 |
99.057 |
0.368 |