Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KS2013_RS08790 Genome accession   NZ_CP012418
Coordinates   1899671..1900915 (-) Length   414 a.a.
NCBI ID   WP_068992648.1    Uniprot ID   A0A1B3BCB3
Organism   Kangiella sediminilitoris strain KCTC 23892     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894671..1905915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KS2013_RS08760 (KS2013_1735) ampE 1894818..1895678 (-) 861 WP_068992630.1 regulatory signaling modulator protein AmpE -
  KS2013_RS08765 (KS2013_1736) ampD 1895752..1896327 (-) 576 WP_068992632.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KS2013_RS08770 (KS2013_1737) nadC 1896419..1897288 (+) 870 WP_068992635.1 carboxylating nicotinate-nucleotide diphosphorylase -
  KS2013_RS08775 (KS2013_1738) zapD 1897332..1898099 (-) 768 WP_068992638.1 cell division protein ZapD -
  KS2013_RS08780 (KS2013_1739) coaE 1898105..1898725 (-) 621 WP_068992641.1 dephospho-CoA kinase -
  KS2013_RS08785 (KS2013_1740) - 1898738..1899646 (-) 909 WP_068992644.1 A24 family peptidase -
  KS2013_RS08790 (KS2013_1741) pilC 1899671..1900915 (-) 1245 WP_068992648.1 type II secretion system F family protein Machinery gene
  KS2013_RS08795 (KS2013_1742) pilB 1901042..1902754 (-) 1713 WP_068992651.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KS2013_RS08800 (KS2013_1743) - 1902822..1904543 (-) 1722 WP_169816866.1 PglL family O-oligosaccharyltransferase -
  KS2013_RS08805 (KS2013_1744) - 1904603..1905043 (-) 441 WP_068992656.1 pilin -
  KS2013_RS08810 (KS2013_1745) yacG 1905561..1905758 (+) 198 WP_068992659.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44426.07 Da        Isoelectric Point: 9.7998

>NTDB_id=154359 KS2013_RS08790 WP_068992648.1 1899671..1900915(-) (pilC) [Kangiella sediminilitoris strain KCTC 23892]
MATAVKKRGAAAKKQKLKNFQYKGVNKQGQKVSGSMPAESADAVKMQLRKQGITPKTVNAELFSFGSSKKPIKPVDIAVF
LRQLATMMKAGVPLVQSFDIIGKGHENASVQDLVQNIKEEVESGSPFATALRSHPKYFDDLVCDLIHAGEQSGTLEQMLD
RIATYKEKTEALKSKIKKAMMYPTAVIVVSIAVTAVLLIYVVPMFKDLFSGAGADLPALTAMVVGASESMQANWYIYFGV
LIAIVVGFSQANKRSKAFREAKDRFLLKVPIFGPLVQKAAVARYARTLATTFAAGVPLVDALDSAAGAAGNTVYKKAIMK
IKDDVTSGLQINMAMTSTGVFPNMVNQMVAIGEESGAVDTMLSKVADIYEAEVDDAVDGLSSLIEPFVIVFIGGLVGTII
VAMYLPIFKLGDAF

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=154359 KS2013_RS08790 WP_068992648.1 1899671..1900915(-) (pilC) [Kangiella sediminilitoris strain KCTC 23892]
ATGGCGACAGCAGTTAAAAAGCGTGGGGCAGCTGCGAAAAAACAAAAACTAAAGAACTTTCAGTACAAAGGAGTAAATAA
ACAAGGGCAGAAAGTAAGCGGTTCCATGCCCGCCGAGAGTGCTGATGCTGTTAAAATGCAGCTTCGTAAACAGGGTATTA
CCCCGAAAACCGTTAATGCTGAGTTATTTTCTTTTGGTTCAAGTAAAAAACCAATTAAGCCGGTTGATATAGCAGTTTTC
TTGCGTCAATTAGCAACCATGATGAAAGCGGGTGTGCCGCTGGTACAGTCCTTTGATATTATCGGTAAGGGGCATGAGAA
TGCCAGTGTCCAAGACTTGGTGCAAAACATTAAAGAAGAAGTTGAATCAGGTAGTCCCTTTGCAACAGCATTGAGAAGCC
ATCCTAAGTATTTTGATGACTTAGTTTGTGATTTGATTCATGCTGGTGAGCAGTCGGGCACACTGGAGCAAATGCTCGAT
CGTATTGCGACCTATAAAGAAAAAACGGAAGCACTGAAGTCAAAAATTAAAAAGGCAATGATGTACCCTACAGCAGTTAT
CGTCGTTTCTATTGCGGTGACGGCGGTATTGCTAATATACGTTGTACCAATGTTTAAAGATTTATTCTCTGGAGCTGGAG
CTGATTTGCCGGCACTTACAGCCATGGTAGTAGGCGCTTCTGAGAGTATGCAAGCCAACTGGTATATATACTTTGGAGTA
CTAATTGCGATAGTCGTTGGGTTCTCCCAAGCTAATAAGCGTTCCAAAGCCTTTAGAGAGGCGAAAGACAGATTCTTGTT
AAAGGTTCCCATTTTTGGACCCTTAGTTCAAAAAGCGGCTGTAGCACGGTATGCACGTACATTAGCCACAACTTTTGCCG
CTGGTGTACCCCTGGTTGATGCCTTGGATTCAGCTGCAGGTGCTGCTGGTAACACAGTTTACAAGAAAGCTATTATGAAA
ATTAAGGATGATGTAACTAGTGGTTTACAGATTAATATGGCAATGACTTCAACTGGTGTGTTCCCTAATATGGTCAACCA
GATGGTTGCTATTGGTGAAGAGTCAGGTGCCGTGGATACCATGCTGTCGAAAGTTGCAGATATATATGAGGCTGAGGTTG
ATGATGCGGTTGATGGATTAAGCTCCCTGATCGAACCTTTCGTAATTGTATTTATCGGCGGCCTGGTAGGTACTATCATT
GTGGCGATGTACTTACCAATCTTTAAACTGGGTGATGCATTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(80-203)

Type II secretion system (T2SS), protein F (T2SSF)

(285-406)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3BCB3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

57.284

97.826

0.56
  pilC Pseudomonas stutzeri DSM 10701

57.25

96.618

0.553
  pilC Legionella pneumophila strain ERS1305867

55.779

96.135

0.536
  pilC Acinetobacter baumannii D1279779

54.95

97.585

0.536
  pilG Neisseria gonorrhoeae MS11

44.307

97.585

0.432
  pilG Neisseria meningitidis 44/76-A

44.059

97.585

0.43
  pilC Vibrio campbellii strain DS40M4

42.317

95.894

0.406
  pilC Vibrio cholerae strain A1552

41.646

96.86

0.403
  pilC Thermus thermophilus HB27

38.75

96.618

0.374

Multiple sequence alignment