Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   P40_RS16575 Genome accession   NZ_CP012331
Coordinates   3597035..3598258 (+) Length   407 a.a.
NCBI ID   WP_022995251.1    Uniprot ID   A0A9Q3W6L4
Organism   Alloalcanivorax xenomutans strain P40     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3592035..3603258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P40_RS22145 - 3593794..3594222 (+) 429 WP_145953609.1 hypothetical protein -
  P40_RS16565 (P40_16360) - 3594420..3594890 (-) 471 WP_080531403.1 pilin -
  P40_RS16570 (P40_16365) pilB 3595252..3596964 (+) 1713 WP_080531404.1 type IV-A pilus assembly ATPase PilB Machinery gene
  P40_RS16575 (P40_16370) pilC 3597035..3598258 (+) 1224 WP_022995251.1 type II secretion system F family protein Machinery gene
  P40_RS16580 (P40_16375) pilD 3598286..3599149 (+) 864 WP_022995250.1 A24 family peptidase Machinery gene
  P40_RS16585 (P40_16380) coaE 3599364..3599969 (+) 606 WP_022995249.1 dephospho-CoA kinase -
  P40_RS16590 (P40_16385) - 3599959..3600153 (+) 195 WP_022995248.1 DNA gyrase inhibitor YacG -
  P40_RS16595 (P40_16390) - 3600154..3601104 (-) 951 WP_080531405.1 Nudix family hydrolase -
  P40_RS16600 (P40_16395) argJ 3601107..3602336 (-) 1230 WP_080531406.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 43716.45 Da        Isoelectric Point: 9.6623

>NTDB_id=153547 P40_RS16575 WP_022995251.1 3597035..3598258(+) (pilC) [Alloalcanivorax xenomutans strain P40]
MAKTAAQQKTATFLYEGLDRKGSKVKGEISGKGPALVRAELRRQGIQARKVIKKRELSLGGKKKIKPADIALFTRQMATM
MKAGVPLVQSFDIVADGLDNPSMKDVVLKIKTEVEGGNNFAGALRQHPTLFDDLYCSLIESGEASGSLETMLDRVALYKE
KSEALKSKIRKAVKYPIAVICVAVIVTGILLVKVVPTFQELFEGFGAELPAFTQFVIGLSEGLQAHFLPILLGAGAIIAG
FIQGRKRSQTFKDAVDRLLLRLPIIGDITHKATVARFARTLSTTFAAGVPLIDALDACAGATGNVVYRKAVVQVKEDVAT
GQQLQFAMRSTGVFPPMALQMTAIGEESGALDGMLGKVATYYEDEVDNLVDGLTSMLEPLIMSVLGVLIGGLIIAMYLPI
FQLGQVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=153547 P40_RS16575 WP_022995251.1 3597035..3598258(+) (pilC) [Alloalcanivorax xenomutans strain P40]
ATGGCTAAGACAGCGGCGCAGCAGAAAACCGCCACTTTTCTCTACGAAGGCCTTGATCGCAAGGGCAGTAAAGTCAAAGG
GGAAATCAGCGGCAAGGGCCCGGCGCTGGTGCGCGCTGAATTGCGCCGCCAGGGCATTCAGGCACGCAAGGTGATCAAGA
AGCGGGAGCTGTCCCTGGGCGGCAAGAAGAAGATCAAACCCGCCGACATCGCCCTGTTCACCCGCCAGATGGCCACCATG
ATGAAAGCCGGCGTACCGCTGGTGCAATCCTTCGATATTGTCGCCGATGGTCTGGACAATCCATCGATGAAGGACGTGGT
GCTGAAGATCAAGACCGAGGTGGAAGGCGGCAACAACTTCGCCGGAGCCCTGCGACAGCACCCGACACTGTTCGACGATC
TGTACTGCAGCCTGATCGAATCCGGCGAGGCTTCCGGCTCGCTGGAGACCATGCTGGATCGTGTCGCGCTCTATAAAGAA
AAAAGCGAGGCCTTGAAATCCAAGATCCGCAAGGCGGTGAAATACCCCATTGCCGTCATCTGTGTCGCCGTTATCGTCAC
CGGCATCCTGCTGGTAAAAGTGGTGCCCACCTTTCAGGAATTATTTGAAGGATTCGGGGCCGAGTTGCCGGCCTTTACCC
AGTTCGTCATCGGATTGTCCGAAGGACTGCAGGCTCATTTTCTCCCCATACTGCTTGGAGCAGGCGCGATTATTGCCGGT
TTCATCCAGGGAAGGAAACGGTCCCAAACCTTCAAGGACGCCGTGGATCGCCTGTTGCTGCGCTTGCCGATCATTGGCGA
CATCACTCACAAAGCCACCGTGGCCCGGTTTGCCCGAACCCTGTCCACCACCTTCGCCGCCGGTGTCCCTCTGATCGACG
CCCTGGACGCCTGCGCCGGCGCCACTGGCAATGTGGTTTATCGCAAGGCGGTAGTGCAGGTCAAAGAAGACGTGGCCACC
GGCCAGCAGCTACAATTCGCCATGCGTTCCACCGGTGTTTTCCCGCCAATGGCCTTGCAGATGACCGCCATTGGCGAGGA
ATCCGGGGCCCTGGACGGTATGCTTGGTAAAGTCGCCACCTACTACGAGGATGAGGTGGATAATCTCGTGGACGGTCTGA
CCAGCATGCTGGAGCCGCTGATCATGTCGGTGCTGGGTGTGCTGATCGGCGGCCTGATCATCGCCATGTATCTGCCGATC
TTCCAACTGGGTCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.165

98.034

0.649
  pilC Acinetobacter baylyi ADP1

64.925

98.771

0.641
  pilC Acinetobacter baumannii D1279779

64.428

98.771

0.636
  pilC Legionella pneumophila strain ERS1305867

53.401

97.543

0.521
  pilG Neisseria gonorrhoeae MS11

44.14

98.526

0.435
  pilC Vibrio cholerae strain A1552

44.472

97.789

0.435
  pilG Neisseria meningitidis 44/76-A

43.89

98.526

0.432
  pilC Vibrio campbellii strain DS40M4

42.787

100

0.43
  pilC Thermus thermophilus HB27

37.073

100

0.373

Multiple sequence alignment