Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0011c   Type   Machinery gene
Locus tag   CUREO_RS07735 Genome accession   NZ_CP012195
Coordinates   1531103..1531354 (-) Length   83 a.a.
NCBI ID   WP_018713931.1    Uniprot ID   A0AAU8UCA5
Organism   Campylobacter ureolyticus RIGS 9880     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1526103..1536354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUREO_RS09060 (CUREO_1549) - 1526159..1526515 (-) 357 WP_050335823.1 sigma factor-like helix-turn-helix DNA-binding protein -
  CUREO_RS07715 (CUREO_1551) murD 1526718..1527923 (-) 1206 WP_050335825.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  CUREO_RS07720 (CUREO_1552) mraY 1527928..1528992 (-) 1065 WP_050335827.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  CUREO_RS07725 (CUREO_1553) gpmI 1529078..1530541 (+) 1464 WP_050335829.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  CUREO_RS07730 (CUREO_1554) - 1530561..1530884 (+) 324 WP_050335832.1 hypothetical protein -
  CUREO_RS07735 (CUREO_1555) Cj0011c 1531103..1531354 (-) 252 WP_018713931.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 83 a.a.        Molecular weight: 9469.10 Da        Isoelectric Point: 9.5698

>NTDB_id=152138 CUREO_RS07735 WP_018713931.1 1531103..1531354(-) (Cj0011c) [Campylobacter ureolyticus RIGS 9880]
MKRLLLLFVFSFSLLFGAVNINTASKEELMTLKGIGEATAEAIIEYRKENKFTKIEDIKNVKGIGDKKFESIKEDIEVKD
NKK

Nucleotide


Download         Length: 252 bp        

>NTDB_id=152138 CUREO_RS07735 WP_018713931.1 1531103..1531354(-) (Cj0011c) [Campylobacter ureolyticus RIGS 9880]
ATGAAAAGACTGCTGTTATTATTTGTTTTTAGTTTTAGTTTGTTGTTCGGTGCTGTAAATATAAACACTGCTTCCAAGGA
AGAACTTATGACTCTTAAGGGTATTGGAGAGGCTACAGCAGAAGCTATAATAGAATATAGAAAAGAGAATAAATTTACAA
AAATAGAAGATATTAAAAATGTAAAAGGCATAGGTGATAAGAAGTTTGAATCAATAAAAGAAGATATTGAAGTTAAGGAT
AATAAGAAGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(18-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.103

93.976

0.602
  comE Neisseria gonorrhoeae MS11

45.679

97.59

0.446
  comE Neisseria gonorrhoeae MS11

45.679

97.59

0.446
  comE Neisseria gonorrhoeae MS11

45.679

97.59

0.446
  comE Neisseria gonorrhoeae MS11

45.679

97.59

0.446
  comEA Bacillus subtilis subsp. subtilis str. 168

59.677

74.699

0.446
  comEA Vibrio parahaemolyticus RIMD 2210633

43.902

98.795

0.434
  comEA Vibrio cholerae C6706

64

60.241

0.386
  comEA Vibrio cholerae strain A1552

64

60.241

0.386
  comEA Legionella pneumophila str. Paris

44.776

80.723

0.361
  comEA Legionella pneumophila strain ERS1305867

44.776

80.723

0.361

Multiple sequence alignment