Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BSM4216_RS15720 Genome accession   NZ_CP012024
Coordinates   3353890..3354387 (-) Length   165 a.a.
NCBI ID   WP_048624326.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3348890..3359387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS15700 (BSM4216_3839) rplI 3350026..3350475 (-) 450 WP_003353445.1 50S ribosomal protein L9 -
  BSM4216_RS15705 (BSM4216_3840) - 3350472..3352445 (-) 1974 WP_048624325.1 DHH family phosphoesterase -
  BSM4216_RS15710 (BSM4216_3841) - 3352462..3353403 (-) 942 WP_156179279.1 YybS family protein -
  BSM4216_RS15715 (BSM4216_3842) rpsR 3353627..3353863 (-) 237 WP_003353442.1 30S ribosomal protein S18 -
  BSM4216_RS15720 (BSM4216_3843) ssbA 3353890..3354387 (-) 498 WP_048624326.1 single-stranded DNA-binding protein Machinery gene
  BSM4216_RS15725 (BSM4216_3844) rpsF 3354457..3354744 (-) 288 WP_048624327.1 30S ribosomal protein S6 -
  BSM4216_RS15730 (BSM4216_3846) ychF 3355095..3356195 (-) 1101 WP_048624328.1 redox-regulated ATPase YchF -
  BSM4216_RS15740 (BSM4216_3849) - 3356677..3356880 (-) 204 WP_003353436.1 DUF951 domain-containing protein -
  BSM4216_RS15745 (BSM4216_3850) - 3356895..3357794 (-) 900 WP_048624330.1 mechanosensitive ion channel family protein -
  BSM4216_RS15750 (BSM4216_3851) yyaC 3357976..3358590 (+) 615 WP_048624331.1 spore protease YyaC -
  BSM4216_RS15755 (BSM4216_3852) - 3358636..3359343 (-) 708 WP_048624332.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18800.62 Da        Isoelectric Point: 4.6896

>NTDB_id=150525 BSM4216_RS15720 WP_048624326.1 3353890..3354387(-) (ssbA) [Bacillus smithii strain DSM 4216]
MMNRVVLVGRLTRDPELRYTPNGVAVATFTLAVNRNYTNQQGEREADFINCVVWRRPAENVANYLKKGSLAGVDGRLQTR
NYEAQDGRRVYVTEVLAESVQFLEPRSVTNNRGGENGFYSGQKSQDFPFSPNQNQQRNENYTRVDEDPFANDGQQIDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=150525 BSM4216_RS15720 WP_048624326.1 3353890..3354387(-) (ssbA) [Bacillus smithii strain DSM 4216]
ATGATGAACCGTGTCGTTTTGGTCGGTCGGTTAACAAGGGATCCTGAGCTTCGATATACACCGAATGGAGTAGCGGTTGC
TACCTTTACTCTTGCTGTCAATCGAAATTATACGAATCAACAGGGCGAAAGAGAAGCTGACTTTATTAATTGTGTAGTAT
GGCGGCGCCCGGCTGAAAACGTGGCAAACTACTTAAAAAAAGGTAGTTTAGCTGGCGTTGACGGCCGTTTGCAAACACGA
AACTATGAAGCACAAGATGGAAGACGTGTATATGTAACAGAAGTTCTAGCCGAAAGCGTTCAATTTTTAGAGCCACGCAG
CGTTACCAATAATCGCGGCGGTGAAAACGGATTTTATAGCGGCCAGAAATCTCAGGATTTTCCGTTTAGCCCAAATCAGA
ATCAACAAAGAAATGAAAATTATACACGTGTAGATGAAGATCCATTTGCCAACGATGGACAACAAATTGATATTTCCGAT
GATGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.767

100

0.727
  ssb Latilactobacillus sakei subsp. sakei 23K

59.412

100

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

64.242

0.394
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.727

80

0.382
  ssbB/cilA Streptococcus pneumoniae D39

46.97

80

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

46.97

80

0.376
  ssbB/cilA Streptococcus pneumoniae R6

46.97

80

0.376
  ssbB/cilA Streptococcus mitis SK321

46.97

80

0.376
  ssb Glaesserella parasuis strain SC1401

33.702

100

0.37
  ssbB/cilA Streptococcus mitis NCTC 12261

46.212

80

0.37

Multiple sequence alignment